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vcf-zarr-publication
Manuscript and associated scripts for vcf-zarr publication
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mention Our Future Health in introduction
#153
jeromekelleher
opened
1 week ago
0
Gigascience updates
#152
jeromekelleher
closed
1 month ago
0
Minor updates
#151
jeromekelleher
closed
1 month ago
0
Minor tweaks pre sub
#150
jeromekelleher
closed
1 month ago
0
TM acknowledges KRIP
#149
timothymillar
closed
1 month ago
0
Remove typo
#148
jeromekelleher
closed
1 month ago
0
Conflicts of Interest
#147
jeromekelleher
closed
1 month ago
4
Some updates
#146
jeromekelleher
closed
1 month ago
0
Permission to submit preprint
#145
jeromekelleher
closed
1 month ago
14
Typsetting tweaks
#144
jeromekelleher
closed
1 month ago
0
Address Eric and Jeff's comments
#143
jeromekelleher
closed
1 month ago
1
Tweaks
#142
jeromekelleher
closed
1 month ago
2
Suggestion for expanding the "Extracting fields" section
#141
shz9
closed
1 month ago
0
Update note about position index
#140
jeromekelleher
closed
1 month ago
0
Another edit pass
#139
jeromekelleher
closed
1 month ago
0
Editing again
#138
jeromekelleher
closed
1 month ago
0
Tidy s figs
#137
jeromekelleher
closed
1 month ago
0
Add finegrained chunksize
#136
jeromekelleher
closed
1 month ago
0
Ordered labels in legend to match order of trend lines
#135
shz9
closed
1 month ago
0
Adding fine-grained chunksize benchmarks
#134
shz9
closed
2 months ago
1
More edits 3
#133
jeromekelleher
closed
2 months ago
0
Some edits2
#132
jeromekelleher
closed
2 months ago
0
Edits more edits
#131
jeromekelleher
closed
2 months ago
0
Discuss non-human uses of zarr for genomic data
#130
alimanfoo
closed
2 months ago
3
Add in bit about annotations
#129
jeromekelleher
closed
2 months ago
0
Some edits
#128
jeromekelleher
closed
2 months ago
0
Write up default choices and discuss figs
#127
jeromekelleher
closed
2 months ago
0
Add compressor benchmarks
#126
jeromekelleher
closed
2 months ago
0
Update storage benchmarks
#125
jeromekelleher
closed
2 months ago
0
Refinements for GEL section
#124
jeromekelleher
closed
1 month ago
0
Gel chr2 data
#123
jeromekelleher
closed
2 months ago
0
Add chr2 stats
#122
benjeffery
closed
2 months ago
0
Add 2-bit encoding to data scaling fig
#121
jeromekelleher
closed
2 months ago
0
Add data from GeL
#120
benjeffery
closed
2 months ago
0
Rejig new figures and colours slightly
#119
jeromekelleher
closed
2 months ago
0
Plot 2 bit plink-esque line on Fig 2?
#118
jeromekelleher
closed
2 months ago
1
Cite JupyterBook for docs
#117
jeromekelleher
closed
1 month ago
0
Simplifying / updating compression analysis and figures
#116
shz9
closed
2 months ago
0
Mention VCF Zarr as "Draft" status?
#115
jeromekelleher
closed
1 month ago
0
Discussion pass2
#114
jeromekelleher
closed
2 months ago
0
Simulation benchmarking methods
#113
jeromekelleher
closed
2 months ago
0
Use Zarr instead
#112
jeromekelleher
closed
2 months ago
0
Add allele counting code
#111
jeromekelleher
closed
2 months ago
0
Work in point about max dimensions
#110
jeromekelleher
closed
2 months ago
0
Compression plots
#109
jeromekelleher
closed
2 months ago
0
Follow-ups on compression analysis
#108
jeromekelleher
closed
2 months ago
4
Add comment in GEL section saying why we don't compare with other tools
#107
jeromekelleher
closed
2 months ago
0
Adding scripts for compression benchmarks
#106
shz9
closed
2 months ago
1
Plot extract to mem
#105
jeromekelleher
closed
2 months ago
0
Column extract to mem
#104
jeromekelleher
closed
2 months ago
0
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