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vcf-zarr-publication
Manuscript and associated scripts for vcf-zarr publication
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Mention VCF Zarr as "Draft" status?
#115
jeromekelleher
closed
3 months ago
0
Discussion pass2
#114
jeromekelleher
closed
3 months ago
0
Simulation benchmarking methods
#113
jeromekelleher
closed
4 months ago
0
Use Zarr instead
#112
jeromekelleher
closed
4 months ago
0
Add allele counting code
#111
jeromekelleher
closed
4 months ago
0
Work in point about max dimensions
#110
jeromekelleher
closed
4 months ago
0
Compression plots
#109
jeromekelleher
closed
4 months ago
0
Follow-ups on compression analysis
#108
jeromekelleher
closed
3 months ago
4
Add comment in GEL section saying why we don't compare with other tools
#107
jeromekelleher
closed
3 months ago
0
Adding scripts for compression benchmarks
#106
shz9
closed
4 months ago
1
Plot extract to mem
#105
jeromekelleher
closed
4 months ago
0
Column extract to mem
#104
jeromekelleher
closed
4 months ago
0
Pass through other benchmarks
#103
jeromekelleher
closed
4 months ago
0
More stuff
#102
jeromekelleher
closed
4 months ago
0
Edit pass n
#100
jeromekelleher
closed
4 months ago
0
Intro++
#99
jeromekelleher
closed
4 months ago
0
Another pass at intro narrative
#98
jeromekelleher
closed
4 months ago
0
Zarr usage bio
#97
jeromekelleher
closed
4 months ago
0
MOre Zarr narrative
#96
jeromekelleher
closed
4 months ago
0
Zarr stuff
#95
jeromekelleher
closed
4 months ago
0
Change title
#94
jeromekelleher
closed
4 months ago
0
Start on listing Zarr implementations
#93
jeromekelleher
closed
4 months ago
0
Minor updates
#92
jeromekelleher
closed
4 months ago
0
Add second affil for @timothymillar
#91
jeromekelleher
closed
4 months ago
0
Add GRG to specialised genotype method refs
#90
jeromekelleher
closed
4 months ago
0
TM affiliations
#89
timothymillar
closed
4 months ago
0
Cite bioframes
#88
jeromekelleher
closed
3 months ago
1
Title
#87
jeromekelleher
closed
4 months ago
4
Update for authors
#86
jeromekelleher
closed
4 months ago
0
Some work on the intro narrative
#85
jeromekelleher
closed
4 months ago
0
Update figs
#84
jeromekelleher
closed
4 months ago
0
Add subset matrix cold-cache numbers
#83
jeromekelleher
closed
4 months ago
0
Authorship
#82
jeromekelleher
closed
2 months ago
13
Cold cache whole matrix compute
#81
jeromekelleher
closed
4 months ago
0
Some writing
#80
jeromekelleher
closed
4 months ago
0
Redo Zarr and Savyy benchmarks with a cold disk cache
#79
jeromekelleher
closed
4 months ago
0
Update plots doc
#78
jeromekelleher
closed
4 months ago
0
Update subset data
#77
jeromekelleher
closed
4 months ago
0
Update compute data with final zarr layout
#76
jeromekelleher
closed
4 months ago
0
Add noshuffle to doc
#75
jeromekelleher
closed
4 months ago
0
Content for VCF Zarr Specification section
#74
tomwhite
closed
4 months ago
0
How annotations are managed
#73
jeromekelleher
closed
3 months ago
2
OpenCGA
#72
jeromekelleher
closed
3 months ago
1
Paper benchmarking annotation query performance
#71
jeromekelleher
closed
3 months ago
0
Comments from Tom
#70
jeromekelleher
closed
4 months ago
0
Add Zarr and Savvy decode to memory lines for figure 5
#69
jeromekelleher
closed
4 months ago
0
The Hardware Lottery parallels/reference
#68
ravwojdyla
closed
3 months ago
1
Cite scverse
#67
jeromekelleher
closed
4 months ago
0
Standardise on VCF-Zarr spec for the text
#66
jeromekelleher
closed
4 months ago
0
More nuanced narrative re row-wise vs columnar
#65
jeromekelleher
closed
4 months ago
3
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