sgkit-dev vcf-zarr-publication issues

sgkit-dev / vcf-zarr-publication

Manuscript and associated scripts for vcf-zarr publication

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Sars-cov-2 alignment storage

#175 jeromekelleher opened 1 week ago
0
Update GEL benchmarks to also report performance on S3

#174 jeromekelleher opened 1 week ago
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Add section discussing SAIGE prototype

#173 jeromekelleher opened 1 week ago
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Add a case study on Viridian SARS-Cov-2 data?

#172 jeromekelleher opened 3 weeks ago
0
Cite "call to action" NRG piece

#171 jeromekelleher opened 3 weeks ago
0
Add Per Unneberg to author list

#170 jeromekelleher opened 1 month ago
3
Add Norway spruce dataset case study

#169 jeromekelleher opened 1 month ago
7
Java afdist

#168 benjeffery closed 1 month ago
7
Generalise zarr

#167 jeromekelleher closed 1 month ago
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Move allocs out of loop

#166 benjeffery closed 1 month ago
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Remove uneeded allocs

#165 benjeffery closed 1 month ago
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Reuse the numba classifier in ts_afdist

#164 jeromekelleher closed 1 month ago
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Implement tensorstore afdist in Python

#163 Will-Tyler closed 2 months ago
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Add C++ tensorstore to benchmarks

#162 jeromekelleher closed 2 months ago
0
Python Tensorstore af-dist implementation

#161 jeromekelleher opened 2 months ago
34
Update ts afdist

#160 jeromekelleher closed 2 months ago
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Minor updates

#159 Will-Tyler closed 2 months ago
1
Cite cpp-zarr

#158 jeromekelleher opened 2 months ago
0
Tensorstore afdist

#157 Will-Tyler closed 2 months ago
7
Citation for plink2 format

#156 jeromekelleher opened 2 months ago
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Add Will Tyler to author list

#155 jeromekelleher opened 2 months ago
1
Tensorstore afdist

#154 jeromekelleher closed 2 months ago
0
mention Our Future Health in introduction

#153 jeromekelleher opened 3 months ago
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Gigascience updates

#152 jeromekelleher closed 4 months ago
0
Minor updates

#151 jeromekelleher closed 4 months ago
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Minor tweaks pre sub

#150 jeromekelleher closed 4 months ago
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TM acknowledges KRIP

#149 timothymillar closed 4 months ago
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Remove typo

#148 jeromekelleher closed 4 months ago
0
Conflicts of Interest

#147 jeromekelleher closed 4 months ago
4
Some updates

#146 jeromekelleher closed 4 months ago
0
Permission to submit preprint

#145 jeromekelleher closed 4 months ago
14
Typsetting tweaks

#144 jeromekelleher closed 4 months ago
0
Address Eric and Jeff's comments

#143 jeromekelleher closed 4 months ago
1
Tweaks

#142 jeromekelleher closed 4 months ago
2
Suggestion for expanding the "Extracting fields" section

#141 shz9 closed 4 months ago
0
Update note about position index

#140 jeromekelleher closed 4 months ago
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Another edit pass

#139 jeromekelleher closed 5 months ago
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Editing again

#138 jeromekelleher closed 5 months ago
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Tidy s figs

#137 jeromekelleher closed 5 months ago
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Add finegrained chunksize

#136 jeromekelleher closed 5 months ago
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Ordered labels in legend to match order of trend lines

#135 shz9 closed 5 months ago
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Adding fine-grained chunksize benchmarks

#134 shz9 closed 5 months ago
1
More edits 3

#133 jeromekelleher closed 5 months ago
0
Some edits2

#132 jeromekelleher closed 5 months ago
0
Edits more edits

#131 jeromekelleher closed 5 months ago
0
Discuss non-human uses of zarr for genomic data

#130 alimanfoo closed 5 months ago
3
Add in bit about annotations

#129 jeromekelleher closed 5 months ago
0
Some edits

#128 jeromekelleher closed 5 months ago
0
Write up default choices and discuss figs

#127 jeromekelleher closed 5 months ago
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Add compressor benchmarks

#126 jeromekelleher closed 5 months ago
0