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bisulfite sequencing \(obo:OBI\_0000748\) should have more specific subclass of "DNA methylation profiling by high throughput sequencing assay" \(obo:OBI\_0001266\) as they are sequencing assay's
Rep…
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MeDIP-SEQ assay \(obo:OBI\_0000693\) should have more specific subclass of "DNA methylation profiling by high throughput sequencing assay" \(obo:OBI\_0001266\) as they are sequencing assay's
Reported…
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Reviewer: 3
Comments to the Author
Review of Zhi et al "Deconvolution of multiple infections in Plasmodium falciparum from high
throughput sequencing data"
This paper describes how to infer t…
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Please add the R script for handling high-throughput sequencing data to [https://github.com/sr320/LabDocs/tree/master/code/script-box](https://github.com/sr320/LabDocs/tree/master/code/script-box). Pl…
kubu4 updated
7 years ago
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Not all are directly relevant, this has become somewhat of a reading list for myself.
- [ ] Sequence Alignment/Map Format Specification
- [ ] The Sequence Alignment/Map format and SAMtools
- [ ] Trim…
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Owl fared poorly after the system update last night. Ironically, the system updates were supposed to greatly improve stability of the system. I have already submitted a support ticket to Synology (the…
kubu4 updated
7 years ago
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I just tried the fasta parsing feature of pyGATB, and I find surprizing results. See the following ipython3 session:
```
In [1]: from gatb import Bank
In [2]: sum(len(seq.sequence) for seq in B…
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Here's how to do it (have to do on both mac an linux if you want to push a new version):
```
## obv change this to the actual latest version
wget https://pypi.python.org/packages/47/bf/9045e90dac…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/valenlab/amplican
Confirm the following by editing each…
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Currently, we only have implemented parallel execution at the fixture level. It should be possible to run individual methods of a fixture in parallel as well as individual test cases for a parameteriz…