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Hello,
Thank you for developing those fancy variant callers.
We conducted short-read RNA sequencing, and since we do not have a control sample, we are planning to call variants using the DeepS…
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Hi, I'm running manta-1.6.0 for days and an error came out, I have no idea of how to solve it. Can anyone help me?
```
[2021-10-18T05:27:26.963507Z] [cngb-compute-e03-8.cngb.sz.hpc] [90379_1] [TaskR…
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Dear professors@tianshiliu,
Recently,I am very interested in your work for lineage tracing use this SClineager package.I use your test data in the data folder,which is the coverage.txt and the …
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Hello,
What is the format of the exons bed file as input to ichorCNA?
Thank you,
Sudhir
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…
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Hi,
I did not find the answer to this question. And I am not sure if this is something reasonable to do.
Can I use single cell data generated by SmartSeq as a normal reference to infer CNVs on 10x g…
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Hi, I have a quetion about removing cnv like noise
First, I use Run_numbat(function) with option like this
`
out = run_numbat(
count_mat, # gene x cell integer UMI count matrix
ref_h…
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An issue has been raised in the meeting today regarding visualizations of the clinical data. Other data viz are also considered. However, more immediately, we need viz schemes of the clinical data for…
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```
Currently dicompyler will read the volume data directly from the calculated DVH
(as of r7db70b8ed0 ).
Prior to this, the volume was calculated in dvhdata.py. However, this volume
was inaccurate…
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I ran a slightly modified test example:
```
source configuration.env
KETREW_CONFIGURATION=_kclient_config/configuration.ml; DREAM=https://storage.googleapis.com/dream-challenge; ocaml run_pipeline.…