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Hi, Jason or Chris,
I'm getting the error below. If I recall, this is because I have combined into the same fasta file sequences that daligner can't handle together. I also remember you had a littl…
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I Installed FALCON according to instructions, with the following two changes:
- Ran `make` before checking out 97b0c27a in DALIGNER to compile DB2Falcon and LA4Falcon
- Added `job_type = local` to the…
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I'm trying to run proovread using daligner, it makes some progress but then fails at the "Correcting Sequences" step.
Did I do something wrong, or is it a bug?
Here's my command line:
```
PERL5LIB=…
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Making a new thread, as per your request. I am hoping you can help me out with an installation issue I have been having at a national computing resource. When I try to rebuild with:
virtualenv --no-…
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When outputting the sequence from Daligner database to `fc_consensus.py`, the first read should be the seed sequence. The rest of the sequences are output in reverse order according to their length. …
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Hi,
I have a 9.4GB preads fasta file. I have tried running the following paramaters:
--d_core 3 --n_core --min_len 8500 preads.fa > preads.ovl
Where --n_core was set at 64, 32, 24, 20 and all faile…
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In `vg` I am using the `P` namespace to define paths. See discussion at https://github.com/lh3/gfatools/issues/2 for more details.
This is absolutely essential for working with reference graphs.
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To assemble human genome with pacbio-only sequencing data, we tried to apply FALCON software. We installed the software following the instructions, and no error turned up in the process of installatio…
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With the ecoli test of falcon, it doesn't complete for
me. It gets to a point where fc_run.py is using about 0.7% of cpu
with no sge jobs running. Up to this point everything works fine:
many d_8b7e…
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Hi, Jason,
Assembling drosophila as a test. I believe all jobs associated with directory
0-rawreads
have completed and falcon is now working on directory
1-preads_ovl
A number of the jobs with nam…