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Hi,
Im am running into some memory issues running Canu. The log-file of canu.03.out looks the following:
```
-- Canu snapshot v1.6 +25 changes (r8437 c8f31513fb9bf28abc902ba2a621349e4ec02bd6)
…
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Hi @torognes I was wondering if it was possible to use Vsearch in such a way as to generate a consensus OTU table from non-overlapping reads. A little background...We have HiSeq data for a microbial b…
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I just gotten a bizarre error with canu1.6 (downloaded from git on Oct17th). It seems canu is unable to detect the read type from my input command?
-nanopore-raw doesn't work either with the raw da…
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Hi,
I am using the following command:
`./canu -useGrid=0 -p BC05 -d /n/scratch2/dct7/Run11_Canu/BC05_AC347 genomeSize=9000 contigFilter="2 1000 1.0 1.0 2" -nanopore-raw /n/scratch2/dct7/Run11_C…
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Ran the command and had the below issue but not really sure where to look and what to solve as I am not sure what the problem is. Canu is newly installed on this machine and I have never managed to ge…
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Hi,
I am using rentrez to get metadata for a large batch of sequences in the nucleotide database. I would also like to easily download the publications attached to each sequence, found online as A…
arw36 updated
7 years ago
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Hi,
I am working with sequence data related to microbial diversity (fungi and bacteria) in soil. I used mothur for 16S analysis of my sequenced data and completed different steps, when i used dist.se…
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Hi,
I'm having a similar issue like #546: https://github.com/marbl/canu/issues/546
The assembly step stops with the following error:
```-- Canu 1.6
--
-- CITATIONS
--
-- Koren S, Walenz BP, Be…
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I have a similar issue like #546 and #718
I installed canu 1.7 on an ubuntu (16.4) workstation. I have a 1G assembly length but with a very low nanopore reads coverage (5X).
This is the command I …
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Hi, I keep on getting this error when running Canu.
```
-- Running jobs. First attempt out of 2.
----------------------------------------
-- Starting 'bat' concurrent execution on Fri Jul 7 04:0…