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https://arxiv.org/abs/1606.05718
#### Abstract
> The International Symposium on Biomedical Imaging (ISBI) held a grand challenge to evaluate computational systems for the automated detection of metas…
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#109 highlighted some issues: namely, which tools to support tumor/paired calls.
There is a comprehensive list on BioStars (http://www.biostars.org/p/19104/), so the plan would be to evaluate which o…
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Hi,
I am trying to run ChimPipe on some RNA-Seq data that we are currently working on. The problem I currently face is the following: When I start the pipeline with ```ChimPipe.sh```, it gets stuck…
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Hi,
We are using BioPortal’s ontology recommender, linked open vocabularies and aber-owl services to map the ImmPort’s tempaltes to OBI and other relevant ontologies. Based on our observation, most…
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Hi
I have problems training on my own dataset. Some batches gives NaN's in dice score.
Have you experienced this before?
Is it possible to incorporate gradient clipping?
If so which script am…
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I found an "ontology" (defined set of concepts and categories) for bioinformatics that's being developed [here](http://edamontology.org/page). I'm extracting the highest-level terms for *Operation* (…
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@chandrans commented on [Mon May 23 2016](https://github.com/broadinstitute/gsa-unstable/issues/1383)
## Bug Report
### Affected tool(s)
MuTect2
### Affected version(s)
3.5 nightly build
### Descri…
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Hello @mjafin ,
We are testing vardict using our proxy bam file for somatic indel detection and are noticing several cases where very low evidence in the proxy bam (3-4 reads at an allele frequency o…
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i used this "./sinvict ../mixture_5-95.readcount -o ../"
but error occured:"terminate called after throwing an instance of 'boost::exception_detail::clone_implboost::exception_detail::error_info_inje…
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Any plan on this? Thanks