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Last Friday I tried to run Piper on the 6 samples recently generated using V4 technology.
All the data and analysis can be found here (it should be accessible by all members of group a2010002) :
```
…
vezzi updated
10 years ago
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Running import on 99-1-1A it get's stuck generating the transcript stats but doesn't fail until time runs out.
I tested essentially the same code manually in iPython and it shouldn't take no more tha…
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Tog ca 11 timmar och sen den här outputen:
Traceback (most recent call last):
File "/pica/h1/henriks/.virtualenvs/virtualenv.py.2.7.1/bin/chanjo", line 347, in
main(args)
File "/pica/h1/henr…
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I'm not sure CONCOCT will be parallel over more than one node. Could this be investigated by someone?
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I found a strange bug: If I run:
```
CONCOCT tests/test_data/coverage tests/test_data/composition.fa -c 3,5,1 -i 100 -b test_out1/ -m 1
```
I get
```
3,35245.9938983
4,36842.5739125
5,38241.0545765…
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At the point https://github.com/SciLifeLab/bcbb/blob/master/nextgen/bcbio/distributed/messaging.py#L56 when
``` python
task_module = "bcbio.distributed.tasks.py"
```
`tasks.py` is supposed to import…
vals updated
11 years ago
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Hi Samuel
I hope I'm not simply using the tool incorrectly.
Given the query:
```
SELECT *
WHERE {
?s ?o
}
```
Where `$smwgNamespace = 'http://example.org/id/';`
On the imported data:
```
…
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Behöver mitt Jonas konto aktiverat.
Kanske Jukka vill att jag ska skriva något sekretessavtal eller sekretessförbindelse?
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What if a customer needs an account at UPPNEX, not just another project? This is not clear in the help text. How do we fix it? And what is the logic actually?
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If the 30TB cache system is filing up faster than the rule deletes files. It is perhaps a good thing to have a admin rule to delete the oldest file in cache.
This rule can be used by admins that ma…