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SciLifeLab
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bcbb
Useful bioinformatics code, primarily in Python and R
http://bcbio.wordpress.com
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HOT FIX: new fastq_screen!!
#305
senthil10
closed
9 years ago
2
Quick fix!!
#304
senthil10
closed
10 years ago
1
Easy PR!! Hot fix!!
#303
senthil10
closed
10 years ago
4
0bp lanes will now use --db for extract barcodes program
#302
remiolsen
closed
10 years ago
2
Quick fix!!!
#301
senthil10
closed
10 years ago
3
Reverted: Sorting of undemultiplexed metrics
#300
remiolsen
closed
10 years ago
1
Run fastq-screen with only first read
#299
parlundin
closed
10 years ago
4
Fixed: Support for merging two index-as-fastq files
#298
remiolsen
closed
10 years ago
3
Fixed: Read counts for samples on single lane
#297
remiolsen
closed
10 years ago
0
Single sample on lane - wrong read count
#296
remiolsen
closed
10 years ago
1
Single read sequenced
#295
remiolsen
closed
10 years ago
1
Single sample on lane
#294
remiolsen
closed
10 years ago
6
Single sample on lane
#293
remiolsen
closed
10 years ago
1
Update .travis.yml to --allow-external when finding pysam
#292
mariogiov
closed
10 years ago
1
Demultiplexing mixed length dual index runs
#291
remiolsen
closed
10 years ago
1
Single sample on lane
#290
remiolsen
closed
10 years ago
1
Add header if the first Undetermined_stats.metrics file is empty. Fixes #288
#289
guillermo-carrasco
closed
11 years ago
0
Undemultiplexed metric file corrupted
#288
guillermo-carrasco
closed
11 years ago
0
Develop
#287
b97pla
closed
11 years ago
0
Fixes #285: Check if Undemultiplexed_stats.metrics is present before merging
#286
guillermo-carrasco
closed
11 years ago
2
Illumina_finished_message.py crashes in merge_demux_results if files not present.
#285
guillermo-carrasco
closed
11 years ago
1
parse snpeff configuration from config
#284
b97pla
closed
11 years ago
0
Hot fix: Merge mfs_dir with basename, not with absolute path
#283
guillermo-carrasco
closed
11 years ago
0
Synch demultiplexing results to MooseFS
#282
guillermo-carrasco
closed
11 years ago
0
Mrege Undemultiplexed_stats.metrics files
#281
guillermo-carrasco
closed
11 years ago
0
Add redis handler to bcbio!
#280
guillermo-carrasco
closed
11 years ago
3
Invalid cross-device link solved by substituting os.rename by shutil.move
#279
guillermo-carrasco
closed
11 years ago
0
Change rsync options so it does not override ownerships/permissions
#278
guillermo-carrasco
closed
11 years ago
1
include demultiplexing configuration in upload
#277
b97pla
closed
11 years ago
1
Merge demultiplexing results
#276
guillermo-carrasco
closed
11 years ago
1
Deprecation warning, bcbb/nextgen is bcbio-nextgen. @chapmanb, could you...
#275
brainstorm
closed
11 years ago
3
Substitute multiprocessing.Pool.map for non-parallel map
#274
guillermo-carrasco
closed
11 years ago
2
Custom output path demultiplexing results
#273
guillermo-carrasco
closed
11 years ago
0
Compression
#272
guillermo-carrasco
closed
11 years ago
0
The compression functionality skip some files
#271
guillermo-carrasco
closed
11 years ago
0
Develop
#270
guillermo-carrasco
closed
11 years ago
0
Add versioning for when .git is not available
#269
brainstorm
closed
11 years ago
0
Pipeline workflow diagram
#268
guillermo-carrasco
closed
11 years ago
2
Develop
#267
b97pla
closed
11 years ago
0
Feature/process miseq runs
#266
b97pla
closed
11 years ago
0
Merging new "git describe" versioning into master
#265
brainstorm
closed
11 years ago
0
Pipeline versioning
#264
guillermo-carrasco
closed
11 years ago
6
Develop
#263
b97pla
closed
11 years ago
0
Develop
#262
b97pla
closed
11 years ago
0
HOTFIX: fixed bug with double dot when compressing files [ci skip]
#261
b97pla
closed
11 years ago
0
Call rsync with patterns instead a list of files in simple_upload
#260
guillermo-carrasco
closed
11 years ago
0
Develop
#259
guillermo-carrasco
closed
11 years ago
0
cast file name to string
#258
b97pla
closed
11 years ago
0
Develop
#257
b97pla
closed
11 years ago
0
fix hardcoded Unaligned dir [ci skip]
#256
b97pla
closed
11 years ago
0
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