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SciLifeLab
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bcbb
Useful bioinformatics code, primarily in Python and R
http://bcbio.wordpress.com
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Typo in illumina_finish_msg.py
#255
guillermo-carrasco
closed
11 years ago
0
Develop merge
#254
guillermo-carrasco
closed
11 years ago
0
Extend the command with the "stringized" base mask
#253
guillermo-carrasco
closed
11 years ago
0
HOTFIX: Typo
#252
b97pla
closed
11 years ago
0
Hotfix
#251
guillermo-carrasco
closed
11 years ago
0
Develop
#250
b97pla
closed
11 years ago
0
Demultiplexing for different index configurations
#249
guillermo-carrasco
closed
11 years ago
0
Develop
#248
guillermo-carrasco
closed
11 years ago
0
added compression task to multitask/task
#247
b97pla
closed
11 years ago
0
Develop
#246
b97pla
closed
11 years ago
0
fixed key-error on missing demultiplex metrics
#245
b97pla
closed
11 years ago
0
Refactorization of compress_files
#244
guillermo-carrasco
closed
11 years ago
0
No cleanup and more JVM heap space in travis-ci
#243
guillermo-carrasco
closed
11 years ago
0
No cleanup and more JVM heap space in travis-ci
#242
guillermo-carrasco
closed
11 years ago
0
Develop
#241
b97pla
closed
11 years ago
0
Develop
#240
b97pla
closed
11 years ago
0
Develop
#239
b97pla
closed
11 years ago
0
explicitly specified pysam version in .travis.yaml
#238
b97pla
closed
11 years ago
0
Feature/push files
#237
b97pla
closed
11 years ago
0
Support for default picard-tools
#236
guillermo-carrasco
closed
11 years ago
0
Picard issues with the pipeline
#235
guillermo-carrasco
closed
11 years ago
2
Develop
#234
b97pla
closed
11 years ago
0
updated pattern for catching miseq runs
#233
b97pla
closed
11 years ago
0
HOTFIX: Skip default phix-filtering of samples
#232
b97pla
closed
12 years ago
0
HOTFIX: Skip default phix-filtering of samples
#231
b97pla
closed
11 years ago
0
Develop - merge into master
#230
percyfal
closed
12 years ago
0
Installing cython in advance
#229
guillermo-carrasco
closed
12 years ago
0
Hotfix - Cython is now required
#228
guillermo-carrasco
closed
12 years ago
1
Revamped illumina_finished_msg.py plus minor fixes
#227
b97pla
closed
12 years ago
1
HOTFIX: Hardcode samplesheet csv format
#226
b97pla
closed
12 years ago
0
HOTFIX: Remove fuzzy-matching of samplesheet
#225
b97pla
closed
12 years ago
3
Version naming and logging strategy that includes git commit hash, for p...
#224
vals
closed
12 years ago
0
Introducing HA to rabbitmq via Celery clients: http://docs.celeryproject...
#223
brainstorm
closed
12 years ago
1
Feature/rabbitmq logging
#222
vals
closed
12 years ago
0
Develop -> Master Merge Conflicts fix
#221
vals
closed
12 years ago
0
Develop -> Master
#220
vals
closed
12 years ago
0
Develop - return sorted dest_files
#219
percyfal
closed
12 years ago
0
Merged Brad's patch to skip writing summaries
#218
guillermo-carrasco
closed
12 years ago
0
Feature: compress fastq files
#217
guillermo-carrasco
closed
12 years ago
0
Undoing scilifelab_bcbio
#216
brainstorm
closed
12 years ago
1
tried to make logic behind demultiplexing and phix-filtering more clear....
#215
b97pla
closed
12 years ago
0
Rewrote installation procedure according to the automation recipe
#214
guillermo-carrasco
closed
12 years ago
0
Travis-CI integration for bcbb
#213
guillermo-carrasco
closed
12 years ago
0
Brad patch to skip PDF report generation. Useful for testing.
#212
guillermo-carrasco
closed
12 years ago
1
Added drmaa and couchdb as a dependency for the pipeline
#211
guillermo-carrasco
closed
12 years ago
0
Backwards incompatibility in BWA
#210
guillermo-carrasco
closed
12 years ago
6
Added drmaa and couchdb as a dependency for the pipeline
#209
guillermo-carrasco
closed
12 years ago
0
Develop - merge feature branch statusdb-casava
#208
percyfal
closed
12 years ago
0
Remove obsolete mako templates and scripts.
#207
percyfal
closed
12 years ago
0
Adapted to run with automatic deployment recipe
#206
guillermo-carrasco
closed
12 years ago
0
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