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sometime in the last month (it's been that long since we had a new release) `cwltool` no longer works with draft-2:
https://ci.commonwl.org/job/cwltool-conformance/290/console
Shall we fix it or…
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I'm using http://www.commonwl.org/v1.0/Workflow.html specification and have following questions:
1. What is the meaning of `inputBinding` and `outputBinding` fields in parameters of Workflow?
And …
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https://github.com/common-workflow-language/cwltool/blob/9e3e720ffc18ade0a19fdbb2bea1bed25e9662ae/cwltool/command_line_tool.py#L299-L302
This uses self.requirement and self.hints, which are mutated…
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As reading [this document](http://www.commonwl.org/v1.0/CommandLineTool.html#SchemaDefRequirement) about `SchemaDefRequirement`,
types should be `array`.
On the other hand, [these two props](https…
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I try to do http://www.commonwl.org/v1.0/UserGuide.html#Creating_files_at_runtime with `cwltool`, but I get the output:
> CONFIGVAR=Hello world!Final process status is success
The trailing newli…
stain updated
6 years ago
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Link to specs:
- http://www.commonwl.org/v1.0/CommandLineTool.html#InlineJavascriptRequirement
- http://www.commonwl.org/v1.0/Workflow.html#InlineJavascriptRequirement
Example conformance tests:
…
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I tried to run the example presented in "A Gentle Introduction to the Common Workflow Language" section 2.12 Javascript expressions (~~http://www.commonwl.org/v1.0/UserGuide.html#Javascript_expression…
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## Description
https://github.com/mr-c/mc3/blob/viz/mc3_vcf2maf.cwl
https://github.com/mr-c/mc3/blob/viz/mc3_vcf2maf_full.cwl
https://github.com/mr-c/mc3/blob/viz/mc3_vcf_postfilter.cwl
##…
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Hi Toil team,
I'm getting random pipeline failures in about 20-30% of pipeline runs. When it happens a restart will consistently fail the pipeline run but a relaunch with the same inputs usually su…
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@danbills commented on [Thu Sep 28 2017](https://github.com/broadinstitute/wdl4s/issues/237)
Per the CWL Spec:
> If the file cwl.outputs.json is present in the output, outputBinding is ignored.
…