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Hi David,
Is there a method in maspy to map identified peptides to proteins based on a FASTA file? Ie. redo the mapping done by the search engine?
Thanks!
Johannes
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I was not aware of this resource - is the content the same as cell line ontologies ?
Cellosaurus - a controlled vocabulary of cell lines
http://web.expasy.org/cellosaurus/
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Currently the /? switch is giving following error:
```
MetaMorpheusCommandLine.exe /?
Unhandled Exception: System.TypeInitializationException: The type initializer fo
r 'EngineLayer.MyEngine' …
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While in Sweden, there were questions as to how mass was calculated and after a closer look it needs to be clarified on whether this should be defined with the derivatization type predicate.
Mass is …
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Windows7 Python 3.5.1 Anaconda 2.5.0 biopython 1.66 np110py35_0
(in jupyter)
```
from Bio import ExPASy
handle = ExPASy.get_sprot_raw("P75952")
from Bio import SwissProt
record = SwissProt.read(h…
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Currently GO:0003953 NAD+ nucleosidase activity has a "related" synonym:
ADP-ribosyl cyclase activity
But based on two papers - PMID: 7805847 and PMID: 11866528 I think that 'ADP-ribosyl cyclase ac…
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Basically the main problem will be that so far there was a relationship `TaxonParent` that was always leading to a node of the type `Taxon` but that could come from both `Taxon` and `Organism`.
On the…
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not sure what it is, but something must have severely changed here ...
e.g. peptide SLLLSVNAR
- according to PeptideShaker: Theoretical Mass of 1019.56
- according to Expasy Peptide Mass: 971.5764
o…
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Dear Prof. Perez-Riverol,
I am using your tool for isoelectric point calculation “pIR” cited in http://bioinformatics.oxfordjournals.org/content/early/2015/11/13/bioinformatics.btv674.short
I found t…
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Hat jemand die fünfte Aufgabe bereits gelöst?
Mein Code hat so funktioniert wie ich es wollte (von Hand nachgeprüft), allerdings gab mir Rosalind zurück, dass meine Lösung falsch ist.
Zuerst habe ich …