-
```
In some searches, X!Tandem appears to fail to parse accessions correctly. In
this example, there are two databases that have been concatenated, so perhaps
this confuses X!Tandem, leading it to e…
-
```
> What steps will reproduce the problem?
> What is the expected output? What do you see instead?
> What version of the product are you using? On what operating system?
Version 0.38.2 on Window…
-
Currently enzymes are not modeled as proper classes in OpenMS.
Usually strings are used instead.
see e.g.
```
const string EnzymaticDigestion::NamesOfEnzymes[] = {"Trypsin"};
const string EnzymaticDi…
-
```
Hello, I just found your tool today, and am interested in using it. I tried
running the example file 'run_examples.bat', and ran into this
java.io.FileNotFoundException...
What steps will repro…
-
```
/mzIdentML/DataCollection/Inputs/SearchDatabase/@numResidues is type
xsd:int, which is a problem, because some databases have more than 2
billion residues.
```
Original issue reported on code.go…
-
```
Email thread copied from list:
Hi Sean,
Good point – this is clearly an error in the specification document,
retention time is certainly allowed to be present in a PSM and is used in this
way…
-
```
> Modifications that cannot be found in UniMod
> -------------------------------------------------------------
> It is not a good idea to allow exporters to have a 'wild card' to
> report 'undeter…
-
```
Minor schema update:
Removed mzIdentML-->DatabaseReference
This is no longer a valid element now that Database has been removed.
(i.e. this gave the ability for a file to reference a correspo…
-
Error in this line:
https://github.com/PRIDE-Utilities/ms-data-core-api/blob/master/src/main/java/uk/ac/ebi/pride/utilities/data/exporters/MzIdentMLMzTabConverter.java#L251
-
```
Do we need a PeptideEvidenceList element of type Identifiable (having attribute
"id")? It is not referenced...
It seems, that is only necessary for grouping the
elements together having the s…