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I run Aegean with the --island option and cross-match the resulting _isle and _comp tables with an exact match on the island column. When I plot the integrated flux as derived from the component fit a…
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Update from Dimitri, Oct 2012: after talking with many developers and users, we should definitely make the inversion tools in SPECFEM3D more standard and more user friendly. Even if there are many opt…
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Hello
This happens using a particular prediction set. It was created via WebApollo so it may have a bug from the export. How can we debug it?
Assertion failed: (gt_range_contains(&locusrange, &trans…
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Hello
Using Genometools 1.5.5 (as recommended on docs), it seems to fail to compile (i may be doing smth wrong).
Genometools compiled/installed OK (with cairo=no)
$ make prefix=`pwd`/../ cairo=no 6…
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Ethnicity is supported, but not race. Ethnicity and race are not the same thing.
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Hi
I have installed Gephi in Windows 10 and it does not start. There is first picture saying that it is initializing and then it stops.
Would you know how I sort this out?
Many thanks
A
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Dear Daniel
is it possible to support double newlines (i.e. empty line) as a GFF record separator please (on top of the existing ###)?
e.g.
NW_004522754.1 JAMg gene 118683 120968 . …
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I have got two set of genome annotiation stored in two gff3 files. Now I want to see the difference between the gff3 files by gt sketch tool. But the current ‘gt sketch’ can only set the same style f…
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The ratio of int_flux/peak_flux is not 1.00 even for single component islands.
Recent changes to Aegean (v19rc1-78-gc4461b1) bring the value of this ratio to about 1.05, but there is an obvious bias.…
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lmfit v0.8.3 and 0.8.1 work fine
lmfit v0.3 doesn't work
lmfit v0.9 doesn't work
intermediate versions haven't been tested
A fix for v0.9 is on it's way.
I'm not going to bother fixing the problem w…