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Hi everyone,
I've been trying to run the test suite after installing metAMOS from the git clone of 1.5rc3.
```
$ git clone --branch "v1.5rc3" https://github.com/marbl/metAMOS.git
$ mv metAMOS/ metAM…
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Hi,
I'm trying to evaluate cbioportal for an on premise installation. I cloned the repository and tried a simple `mvn compile`. It fails with some error about `${PORTAL_HOME}`.
Unfortunately there a…
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Hi all.
I am currently trying to use metamos on my university HPC facility. I am receiving the following error when during the find ORFs stage.
---
************************_ERROR**_**************…
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Hello,
My run of metAMOS stops with error at various points.
If I try Preprocess and Postprocess only, it stops at Validate.
If I try Preprocess, Assemble, Postprocess only, it stops at Mapreads.
I t…
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The following example files were obtained from a complete run of the demonstration analysis of 12 lanes of Illumina (2x100bp) data generated for HCC1395 RNA and genomic DNA. The following therefore a…
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Hello,
I attempted running the pipeline and got "MissingInputFileError:". It looks as if after assembly, the necessary files are not generated. But am not sure if this is any problem with MetaGeneMark…
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Hi,
I getting the following error probably in the classify step:
Starting Task = classify.CLASSIFY
**\* metAMOS running command: perl -I /home/bioinfo/programas/metAMOS-1.5rc1/AMOS/Linux-x86_64/lib …
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Dear all,
When I try to run metAMOS on test data like this:
[jjin01@tll-rv2 MetaAMOS]$ /data/apps/metAMOS/./runPipeline -a soap -c fcp -g fraggenescan -p 15 -d test1 -k 55 -t -f Assemble,MapReads,Fi…