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Submit your add-ons in this issue, thanks for your contribution!
Submission template:
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**Title:**
**Description:** (a short description to be shown on the addon download window)
**Proposed c…
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**Describe the bug**
The very last cell produces a single line of text with no plot
> VBox(children=(HBox(children=(VBox(children=(HTML(value='Cover parameters'), Text(value='uniform', cont…
Al…
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Dear friends;
When I performed the doLeidenCluster, it showed some errors, as follows, mini_visium
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I trained a simple Autoencoder on MNIST and wanted to compare the persistence diagrams of the reconstructions to those of the inputs.
For some of the reconstructed images it raised the following e…
unJul updated
3 years ago
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**Ticket:** 230743
**Message:**
Hi,
Could I please request the installation of an R package on the cluster? It’s called Giotto and it’s only available through install_github:
remotes::inst…
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**Describe the bug**
For several clustering algorithms, the clustering will not work for a low amount of points. This is because some arguments require more points for some arguments (see example…
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#### Description
`save_weighted_flag` throws error instead of doing it's job.
#### Steps/Code to Reproduce
1) Have a binary adjacency matrix `G`
2) call `save_weighted_flag('foo.bar', G)`
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#### Description
It seems to me that it is unnecessarily unfriendly for the user dealing with sparse matrices to impose that these must be square.
#### Steps/Code to Reproduce
The example of a d…
ulupo updated
3 years ago
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Hello,
I have a question regarding the expr_data file - as I understand, when you enter 'filter' or 'raw' here, Giotto automatically looks for the _feature_bc_matrix folder that contains the barcod…
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Hello, thank you for contributing to such a wonderful tool. I was trying to install the Giotto viewer on my Windows computer. When I followed the instructions and downloaded the Docker image from this…