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Hi Daniel,
As mentioned before, I am currently in the process of comparing pipelines to construct metabolic models. In order to perform a fair benchmark, I want to export the universal model of Ca…
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According to relationship reasoning in the [docs](http://geneontology.org/page/ontology-relations) if A **part_of** B **is_a** C then A **part_of** C. But this does not seem to hold in the following e…
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Hi,
I am currently in the process of comparing pipelines to construct metabolic models. In order to perform a fair benchmark, I want to export the universal model and the corresponding genbank fil…
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recently an interesting article from Benet et al (https://www.ncbi.nlm.nih.gov/pubmed/?term=PMID%3A+28762489 and also see the answer from Malcom Rowland and Pang: https://www.ncbi.nlm.nih.gov/pubmed/?…
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The model in this repository lacks 'boundary' compartment, unlike original Yeast 7.6.
It seems that the COBRA toolbox I/O functions are not amenable for models curation containing 'boundary' compar…
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Thank you for providing the Docker instance.
I was able to run docker and start the jupyter notebook on my machine and with a bit of effort I was able to build the model and solve it using `quadmi…
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Hi,
do you plan to implement the integration of metabolomics (absolute metabolite concentrations) for dG calculation?
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Perform feature data normalization on the positive polarity data. This should include:
- quality assessment based on feature abundances (RSD, RLA)
- injection order dependent signal drift adjustment…
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Not sure about this, since users might be tempted to use it instead of much more robust solutions based on chemical ID mappings. Please add your comments below explaining why you think we should do it…
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I'm here plugging our own initiative: AstroPlant - a collaboration with the European Space Agency.
Sorry for not Pull requesting, I'm not using Github very often. We do publish all on Github (check…