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Inspired by this little [tweetstorm](https://twitter.com/dan_abramov/status/710642981016100864).
## Problem: Side Effects and Composition
We discussed effects in Redux for ages here but this is the f…
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Hi there,
I'm currently working on getting our bcbio installation running on our cluster to speed up the analysis. So far, I'm able to submit the jobs by using the IPython framework to our SGE, how…
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At 2500 cores, Tom estimates 3/4 yr to run DC1. Gulp. The least work mode for DESC currently is to use the shared partition. To be useful we would need factors more than 2500 cores. @djbard was asked …
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**Finalized Ticket**
For the `read_x()` functions, limit the size of data which can be read in. Check the file size prior to attempting to read as reading can also incur network charges. Any attemp…
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**This RFC is just a base and is not actually a complete solution. I think it lays a good ground for proper synchronization handling, but the actual mechanisms haven't been designed yet.**
## On th…
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Hi,
I ran same pipeline that worked previously with new BCbio version and got "multiprocessing error". Log file is [job.err.log.txt](https://github.com/chapmanb/bcbio-nextgen/files/371200/job.err.lo…
duxan updated
7 years ago
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This is a work log of a "OSS Gate workshop".
"OSS Gate workshop" is an activity to increase OSS developers.
Here's been discussed in Japanese. Thanks.
## 作業ログ作成時の説明
以下のテンプレートを埋めてタイトルに設定します。埋め方…
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I am running a python flask app on bluemix. The code runs perfectly well on local machine( macbook pro) but for some reason I am unable to run it on bluemix. Error is shown below:
`TypeError: 'int'…
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I have a bcbio installation that works well when I qsub to the queue via a script with the -n option only. But when I submit with the -t ipython option it works but fails when it checks the samtools v…
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Hi,
With the below command I got `No grid engine detected, grid disabled ` & I ran out memory.
I tried to run it on PBS Pro cluster on Suse 12.
```
canu -p fruit -d fruit genomeSize=1.8g -…