-
```
Hi,
thank you very much for developing this, I have been looking for a good
alternative to make for a long time.
I want to run a pipeline into Sun Grid Engine system.
I am not a systemist, but I…
-
```
What steps will reproduce the problem?
1. Define a @transform with multiple inputs() pattens
What is the expected output? What do you see instead?
Expected: input_files argument of task function …
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I was wondering why the function mergeBAMfiles was removed in pipeline_mapping
python /net/isi-scratch/cynthia/CGAT-DEPS/cgat/CGATPipelines/pipeline_mapping.py -v5 --local make mergeBAMFiles
Target…
-
```
Any time the output files need to be determined at run time (such as with
@split and @subdivide), when a job starts, the files *currently* present that
match the output's regular expression are …
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Hi all,
I have been fixing pep8 errors in several scripts and I have noticed the following issue.
When running the command:
```
nosetests -v tests/test_style.py
```
the following scripts do not ou…
-
Right now I copy and paste pipeline elements that run various chunks of experiments together.
Is there a recommended best-practice to recreate or reuse subsets of pipelines?
-
Hello,
I tried running the test scripts and I couldn't get passed the preprocess step, I am guessing I am missing one of the processing dependancies. I installed the core and the iMetAMos from the i…
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We were given some Ion Torrent fastq files (single read) for pathogen discovery.
1. I updated the pipeline
2. reran setup
3. rebuilt the documentation
4. I reran the pipeline on a sample I finished la…
-
```
Flowchart appearance should be developer customisable (via a parameter file?)
A. Heger
```
Original issue reported on code.google.com by `bunbu...@gmail.com` on 15 Jul 2010 at 10:09
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The @merge feature is very useful, however sometimes one would need to do something special with the merge, like intersect all the files to be merged to get only common subset of all the files
Let's …