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hi:
when I use snippy now , I only can get the result of snps.raw.vcf, The result of snps.filt.vcf shows only the table's title.The snps.log is as follows:
### echo snippy 4.6.0
### cd /disk1…
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One to file under 'project proposal'/suggestion...
Is there enough sequencing data, spread around the world to enable variants to be identified that appear to be 'winning' the evolution race compa…
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> That's called "almost discrete" in the literature, but there are variants depending on additional separation axioms or not. We'll have to be a little careful when introducing this. But definitely …
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When running sample data HG00119, I meet the error "No annotation.csv found." .
The following is the conf file:
#!/bin/bash
mtdb_fasta=chrM.fa
hg19_fasta=hg19RCRS.fa
mtdb=chrM
humandb=hg19RC…
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_https://github.com/sars-cov-2-variants/lineage-proposals/issues/991 Part I
https://github.com/sars-cov-2-variants/lineage-proposals/issues/1675 Part II
https://github.com/sars-cov-2-variants/lineag…
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Produce a heatmap of the UK to show prevalence of variants in different areas
You will need to obtain data of the prevalence of different variants for each area of the UK and plot this on a map. You …
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The default optimizer sequence we have at the moment is quite large, and thus causes bloating in compilation times.
```
libsolidity/interface/OptimiserSettings.h
```
```cpp
static char constexpr …
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Hi Jim
PrimerTree is a very handy tool! Recently when I ran the package, I got this error. I attached the output here. Do you know if it's because there's too many blast hits?
> Primer = search_prime…
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Title: Learning the language of viral evolution and escape
# General Information
## Please paste a link to the paper or a citation here:
Link: https://science.sciencemag.org/content/371/652…
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Thank you for developing this incredible tool! I'm testing it out by reproducing some of the recombinant clades described in [pango-designation](https://github.com/cov-lineages/pango-designation). So …