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Hi,
I'm having trouble downloading annotations from MG-RAST. Here's an example of the terminal output I got when trying to download MG-RAST sample ID 'mgm4824985.3'
```
> chordomics::launchApp(…
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Hi there!
What does it mean if my report file is empty, but I have a lot of classification results (redirected with `-S` flag)? This is how I have run the command:
```
centrifuge -q -t --met…
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I have created mmseq database with ncbi nt, and added taxonomy information. To shorter the search time, I am trying to create a small database with a certain number of species. I have got the ncbi ta…
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Below is sample of failing request body:
{"status":"ACTIVE","name":"banana11","role":"RETAILCUSTOMER","language":"ENGLISH","activationDate":"2016-05-11T19:59:29+0530","groupAddress":{"phoneNumber":"…
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https://www.wikidata.org/wiki/Q90481889
e.g. https://www.wikidata.org/wiki/Special:WhatLinksHere/Q90481889
Example: https://www.wikidata.org/wiki/Q28209496 remdesivir
this query retrieves the…
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Hello,
I am running into some trouble while executing metaDMG on both my personal computer and an HPC cluster (both Linux). I built metaDMG-cpp using this conda environment:
`conda create -n met…
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Hi Daniel,
I have a sample where Kraken2 reports a hit allegedly originating from SARS-CoV2. It's probably a false positive, but that is not the point. The point is that gridss.kraken.ExtractBestVi…
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The database contains many orphaned objects. For example, under the Taxa tab, search on NCBI taxid 114498, then click either the Trees or Matrices tabs. This results in records even though none of the…
ghost updated
8 years ago
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Hey there, @shenwei356 :)
Thanks again for not only additional wonderful software, but excellent documentation as usual!
I'm looking for a better way to taxonomically classify predicted coding …
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I recently updated my nr and krona tools databases and when I used ktClassifyBLAST to classify my blast results I got a warning that hundreds of accession numbers were not found in my local database. …