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Getting this error in the InterProScan part of the pipeline due to the TransDecoder peptides terminating with `*` to represent a stop codon. This occurs in EnTAP v0.10.3. I assume that it persists in …
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Hi,
Scallop has done a really good job. I used the Scallop results with TransDecoder. Next, I would like to reduce the number of isoforms per gene. I noticed that not always the first isoform is the …
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This is a dependency of TransDecoder and PASA -- perhaps other packages. It seems to "install" "properly", however I think it is not compiling correctly as its non-functional.
Steps to reproduce:
…
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Hi there,
Thank you very much for helping!
I am a newbie to bioinformatics. Currently, I am using TransDecoder to identify the ORF of some transcripts from highly repetitive region from a herp…
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In the end, most of the results are the same, but I accidentally found that one transcript[>MSTRG.9.1] is different. Finally, I wrote a script to extract the same results as gffread!
`~/tools/Trans…
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Getting this error:
```
terminate called after throwing an instance of 'boost::exception_detail::clone_impl'
what(): boost::bad_any_cast: failed conversion using boost::any_cast
/projects/amp/p…
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Hello !
I have another comment regarding the daijin pipeline. When coming through the `TransDecoder.LongOrfs` step in the `daijin mikado` pipeline, it suddenly stops with the error "Sorry, Universa…
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Hi Jon,
Unfortunately I decided to stare at my annotations again...and I think I could do better.
I was just wondering if there was a specific reason not to include PASA models beyond the ones t…
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One of my selected taxon, `anura` (and `amphibia`) is no longer recognized in EnTAP v0.10.3, whereas it was recognized in v0.9.2. Possibly related-- it seems that the taxon verification now takes plac…
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Hello,
First of all, I'd like to say thanks for developing GAWN - I find it very useful and easy to use.
I wanted to ask for advice and/or suggest a new feature.
It would be nice if, apart from the…