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Hi,
Can you provide the dependencies required for proper installation of the package?
Thanks,
Rahul
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For evidence tracks, if I right click on a feature and 'View Details' (HTMLFeatures) or click on a feature (CanvasFeatures) the information displayer popup fails to show sequences for features and sub…
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Something causing crash at startup in syncTracks().
This is probably an initialization timing issue.
It usually happens on the first time 'npm start'.
Subsequent startup will usually work fine.
…
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Hello @LyonsLab CoGe JBrowse maintainers,
Just a thought, would you consider decoupling the `jbrowse/plugins/CoGe` directory from the main `coge` repo into its own standalone repository, so that, a…
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Dear Brigitte,
The plugin works great. It does not work out of the box though, I had to make 2 symlinks:
1. Make a symlink called NucleotideDensityPlugin
```ln -s jbplugin-nucdens NucleotideDensi…
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Doing this already with the REST API using the htseq API from BROAD:
- [ ] project mismatches correctly as subfeatures (or correclty populate another string?)
- [ ] handle MD string mismatches cor…
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The display has an off-by-one issue, which isn't really obvious unless the windowsize and windowdelta are set to 1. Below is a screenshot with a BigWig GC track "GC Content" and below that the GCCont…
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JBrowse version 1.12.1
After installing the plugin, go to [test data](http://localhost/JBrowse/?data=plugins/MAFViewer/test/hg38), while the augustusGene track is shown, MAF track is not shown.
…
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I've followed the instructions on the installation page and I am now trying to upload data. The usage instructions page says:
"(2) Under the File heading on your menu you should see a 'Add BioNanoGeno…
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Even if I don't use this plugin, I can still broken up the bam files manually and then config as:
```
"storeClass" : "JBrowse/Store/SeqFeature/BAM",
"urlTemplate" : "dir/ICR.contig.{refseq}.bam",
"ty…