-
I have successfully annotated my vcf file using a local installation of variant effect predictor (VEP). However, the filtering doesn't work. E.g. the command
`filter_vep -i vep.test.vcf.gz -filter …
matmu updated
5 years ago
-
Hi all,
I'm opening this issue just to introduce myself and our group to the Pangeo community.
My name is Mattia Almansi and I'm a Ph.D. student in Tom Haine group at Johns Hopkins University.
We …
-
At https://docs.scipy.org/doc/numpy/reference/generated/numpy.outer.html#numpy.outer (and probably other places),
> G. H. Golub and C. F. van Loan, Matrix Computations, 3rd ed., Baltimore, MD, John…
-
Question on: https://www.github.com/expfactory/expfactory/tree/master/docs/pages/3-usage.md#feedback-wanted
-
Hi @ehanson8
I was wondering if it's OK to fork your repo and publish your dataset at https://datahub.io
Would you like to have credits or any sources to be specified?
Thanks!
-
The old bash scripts create soft links like epoch1.mdl, epoch2.mdl and so on at the end of each epoch. The new python scripts need to be modified to do this.
-
I have run pg_dump on the modeshape_repository database for demo and restored it to the test environment . I copied the objects from demo to test s3 buckets.
With new environment Hanh does not exi…
-
In adding support for mhcnuggets to pvactools @susannasiebert noted that the expected naming of HLA alleles is different between mhcnuggets and the iedb predictors.
From @susannasiebert,
In run…
-
I'm wondering how robust Masurca is to restarting after getting killed during the assembly step. Basically, my cluster has a queue that is preemptable so jobs can be killed and restarted if a higher …
-
Hello @zji90 and Hongkai
This issue is for discussing the wrapper for your trajectory inference method, TSCAN, which we wrapped for our benchmarking study ([10.1101/276907](https://doi.org/10.1101/27…