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how can I get the targets of a drug using pypath/omnipath? I cannot find an example or a way to do it in the tutorials :/
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ADIOS2 was configured on a 36-core Linux workstation with the following cmake output:
```
Currently Loaded Modules:
1) gcc/8.1 2) mpi/openmpi-4.0.1_gcc-8.1 3) cmake/3.15.1 4) python/3.6…
khuck updated
4 years ago
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Hi,
I am writing to ask a question for CNORFeeder. During the Weighting stage, the example in the tutorial uses "UniprotID=UniprotIDdream", may I know for my own case, how shall I define the Unipro…
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Hi Everyone,
I wonder whether there is some functions in pypath for exporting network to SBML, or SIF, which can keep the attributes (of edges)?
Thank you for your answer
Best regards
Lu
luli7 updated
5 years ago
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```
perfquery -x
PortSelect:......................1
CounterSelect:...................0x0000
PortXmitData:....................15217586
PortRcvData:.....................33204887641
PortXmitPkts:…
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### Version of Singularity:
singularity version 3.2.1-1.1.el7
### Expected behavior
run horovod on GPU-
the container runs fine without LSF when used with mpirun on multiple nodes. but when…
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I keep having a segmentation fault error when downloading the pypath database
**To Reproduce**
1. create an empty conda environment (tried with different environments)
2. install pypath using the…
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Hi,
I am getting quite confused about what/which data sets are included in Omnipath, the curated and highly trusted data sets that can be fetched by pypath or webservices.
Based on the data_form…
luli7 updated
5 years ago
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Running commands from the readme, the first command after install fails with an unloaded dependency
> ptms = import_Omnipath_PTMS(filter_databases=c("PhosphoSite", "Signor"))
[1] "Downloaded 25143…
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Thank you for taking the time to submit an issue!
## Background information
### What version of Open MPI are you using? (e.g., v1.10.3, v2.1.0, git branch name and hash, etc.)
v3.1.0rc2 and m…