-
A small minority of samples (so far 1 in `wes_repo`) repeatedly error out with the following:
```
Traceback (most recent call last):
File "/usr/bin/conpair/scripts/verify_concordances.py", line 3…
-
Hi,
I was wondering if there are any plans to update the TCGAanalyze_SurvivalKM function? It doesn't seem to be compatible with GDCquery.
Thanks,
Regina
-
Need to make sure the default LUT currently used contains all the terms needed by the the Chicago group.
-
```
Currently dicompyler will read the volume data directly from the calculated DVH
(as of r7db70b8ed0 ).
Prior to this, the volume was calculated in dvhdata.py. However, this volume
was inaccurate…
-
Hello Scissor,
I'm running Scissor, but no matter what alpha I used, it always came out 0 selected cells.
Could you please help me with this issue?
Thanks!
Best,
Yuanjian
```R
infos
-
Hi,
I'm getting some false positives results with inferCNV when I try to detect CNVs from myeloid cells using lymphocytes cells as reference. I tested this with a simple PBMC dataset from healthy i…
-
I think it's likely that there is a general expression pattern for how mutated a tumor is. For example, super mutated tumors may have wacky gene expression, solely because they're super mutated and no…
-
```
Currently dicompyler will read the volume data directly from the calculated DVH
(as of r7db70b8ed0 ).
Prior to this, the volume was calculated in dvhdata.py. However, this volume
was inaccurate…
-
```
Currently dicompyler will read the volume data directly from the calculated DVH
(as of r7db70b8ed0 ).
Prior to this, the volume was calculated in dvhdata.py. However, this volume
was inaccurate…
-
Hi,
I have a few questions regarding the exonrunPairedSim function and wonder if you could provide some insights.
1) The coverage was achieved when cov exceeds coverage using cov += 2*batch*subblo…