cognoma machine-learning issues

cognoma / machine-learning

Machine learning for Project Cognoma

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Update README to reflect break with ml-workers

#115 patrick-miller closed 6 years ago
0
Revise parameter grid

#114 rdvelazquez closed 7 years ago
5
[WIP] Number of PCA Components to Keep

#113 rdvelazquez closed 7 years ago
5
Change plots to use plotnine

#112 patrick-miller closed 7 years ago
8
Allow for environment variables in notebook

#111 patrick-miller closed 7 years ago
1
Machine Learning Punch List for Launch

#110 rdvelazquez closed 7 years ago
19
Get gene coefficients

#109 rdvelazquez closed 7 years ago
6
How notebooks will work in production

#108 rdvelazquez closed 7 years ago
12
Update Readme to remove cognoml reference

#107 rdvelazquez closed 7 years ago
0
Selecting the number of components returned by PCA

#106 rdvelazquez closed 7 years ago
16
Add Gene Expression Coefficients for Individual Genes

#105 rdvelazquez closed 7 years ago
14
update environment and notebook 2 with dask-searchcv

#104 rdvelazquez closed 7 years ago
6
Update repository environment, notebooks & READMEs

#103 dhimmel closed 7 years ago
4
Move .py file to scripts directory

#102 dhimmel closed 7 years ago
0
Upload dask-searchCV notebook

#101 rdvelazquez closed 7 years ago
4
Add PCA on expressions only to the CV pipeline

#100 patrick-miller closed 7 years ago
11
Update Vega plot in notebook

#99 patrick-miller closed 7 years ago
3
Dask search cv

#98 rdvelazquez closed 7 years ago
6
Standardize the plots in notebooks

#97 patrick-miller closed 7 years ago
8
PCA (and other pre-processing steps) on just the expression matrix in CV pipeline

#96 patrick-miller closed 7 years ago
3
Upload an Exploratory PCA Notebook

#95 rdvelazquez closed 7 years ago
4
Evaluate dask-searchcv to speed up GridSearchCV

#94 dhimmel closed 7 years ago
7
Add covariates-only model for comparison in the main notebook

#93 patrick-miller closed 7 years ago
13
Rename total column

#92 George-Zipperlen closed 7 years ago
1
Fix heatmap labels

#91 George-Zipperlen closed 7 years ago
13
TOTAL column is skewing the heatmap in 3.TCGA-MLexample_Pathway

#90 George-Zipperlen closed 7 years ago
2
Add colormap

#89 George-Zipperlen closed 7 years ago
3
OncoKB: Precision Oncology Knowledge Base

#88 dhimmel opened 7 years ago
0
Predicting BRAF V600E activation in colorectal cancer

#87 gwaybio opened 7 years ago
0
Thrashing in 2.TCGA-MLexample

#86 jruhym closed 7 years ago
2
Pickle dataframes for fast pandas reading.

#85 dhimmel closed 7 years ago
4
Create Vega specification for AUROC bar plots

#84 patrick-miller closed 7 years ago
4
Multiple comparisons problems

#83 patrick-miller opened 7 years ago
1
Git large-file storage

#82 jruhym opened 7 years ago
7
Isomap with more dimensions

#81 KT12 closed 7 years ago
2
Multi-task classification

#80 brankaj closed 7 years ago
2
New algo VotingClassifier

#79 seignour closed 7 years ago
2
Isomap

#78 KT12 closed 7 years ago
2
Add first version of Vega ROC plots

#77 patrick-miller closed 7 years ago
16
Reduce dimension with random projection

#76 KT12 closed 7 years ago
2
Random_Projection Dimensionality Reduction

#75 KT12 closed 7 years ago
2
Using Vega-Lite and Altair API to visualize the data

#74 superkostya closed 7 years ago
8
Installing a Python Neo4j driver on OSX

#73 superkostya closed 7 years ago
5
Performance on genes with targeted cancer therapies

#72 dhimmel opened 7 years ago
11
Improved the performance of the SGD classifier on sparse mutations by reducing the noise

#71 htcai closed 7 years ago
21
Memory issue

#70 htcai closed 7 years ago
9
Passive Aggressive Classifier

#69 KT12 closed 7 years ago
7
A quick guide for new members

#68 htcai opened 8 years ago
8
Marginal gain of gene expression data over covariates

#67 joshlevy89 closed 7 years ago
31
TP53 mutation prediction from metadata

#66 joshlevy89 closed 7 years ago
3