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As I mentioned, each student will have a "project" that results in a "product". Do you have any preference to what such project is involved with? What is one idea that comes to mind based on the readi…
sr320 updated
7 years ago
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Current docs state:
```
/**
The ID defined by the external onotology source.
(e.g. `http://purl.obolibrary.org/obo/OBI_0001271`)
*/
string id;
```
This is fairly open ended and we can imag…
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Hello there,
This is Olga Botvinnik and Mike Lovci (@mlovci), PhD students in Bioinformatics-type fields at UC-San Diego working on a biological data analysis package for "large" (for biology) dataset…
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```
What steps will reproduce the problem?
1.>>> from pygr import worldbase
2.>>> worldbase.dir()
3.
What is the expected output? What do you see instead?
A list of databases expect but will get this…
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chromosome organzation is linked through is_a
histone H4-R3 methylation
histone H3-S10 phosphorylation
histone H4-K8 acetylation
which seems incorrrect. The problem may be at
chromatin modification
…
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### Introduction
I've always found it's been a real pain for computational biologists to interact with ontologies in Python. The ontology community seems focused on java products and the file formats…
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I joined the Matchmaker Exchange group late last year. After reading up the work done by GA4GH, I found the avro schema files confusing.
After several working group calls and many emails, I managed t…
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I'd like to start the bidding on a new title. Currently it's
Nearest neighbors of discrete time-trees
which is fine, though doesn't seem to really capture what the paper is about.
Some suggestions…
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I am proposing to create a project for integration with graph databases.
Graph databases are widely used in a lot of areas: content management and access control,
bioinformatics, cyber security, net…
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We welcome feedback on this draft - please either:
1. Add a comment to this issue.
2. File a separate issue in this repository.
3. Submit a pull request proposing a change to `robust-software.tex` (by…