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## Describe the bug
I tried to run a notebook using papermill with the following command: `renku run papermill notebooks/GC_Fluxes_Computations_equations.ipynb notebooks/GC_Fluxes_Computations_equati…
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**Describe the bug**
Dockstore relies on cwltool to run CWLs, but it turns out it also relies on it to run WDLs. We refer to cwltool as an optional component in our quick start installation instructio…
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I am trying to deploy a cwl workflow ona kubernetes cluster. I have followed the officially provided [instructions](https://toil.readthedocs.io/en/latest/running/cloud/kubernetes.html) and focused on …
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**Snakemake version**
```
(base) $ snakemake --version
7.0.4
```
**Describe the bug**
Running Snakemake 7.0.4 on a Slurm cluster leads to all jobs failing with the followin…
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Hi,
I'm getting this type of error, maybe there's something wrong with my installation because I previously aligned the same genomes before...
Any help?
Thanks a lot
F
[CACTUS.errors.log](htt…
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Hi,
I had an issue using CWL in Toil.
See https://github.com/common-workflow-language/cwltool/issues/1391 for the problem description.
Shortly, when I want to select a file from the listing of an …
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Should be backwards compatible, details at https://github.com/ga4gh/tool-registry-service-schemas/commit/0aa5443e14c007e991709674625da9db437a5141
┆Issue is synchronized with this [Jira Story](https:/…
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**Is your feature request related to a problem? Please describe.**
When using query parameters on the TRS [list tools endpoint](https://dev.dockstore.net/api/static/swagger-ui/index.html#/GA4GHV20/too…
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I have the following code that takes a list of contig 'objects' and converts them into a list of files.
## The tool
The tool `custom-create-regions-bed-from-contigs-list__1.0.0.cwl` is a valid c…
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All jobs currently provide the following:
- `created`: datetime when the job was submitted and registered for upcoming execution
- `started`: when a worker picked the job and started executing i…