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When I run DCC, I get an error with pybedtools groupby:
python2.7 /home/ehutchins/tools/DCC/DCC/main.py @chimeric_junctions -mt1 @chimeric_junctions_mate1 -mt2 @chimeric_junctions_mate2 -D -N -temp …
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md5sum:
bb39ad5a080b647ecf245ae126a8eb93 remote_drive/mir-count.csv
bb39ad5a080b647ecf245ae126a8eb93 local_drive/mir-count.csv
in python
import pandas as pd
print pd.**version**
-# Shows 0.17.1
L…
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Hi,
I found CIRCexplore a very useful tool for detecting circRNA from RNA-seq. I am interested in detecting circRNA which completely falls in intron (=lariat sequence). I mapped the paired-end reads …