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## Expected Behavior
Tell us what should happen
I am using nodejs / typescript to run the cwltool with code like this:
``` Typescript
conn.exec(command, (err: Error, stream: ssh.ClientChannel)…
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## Expected Behavior
```
Resolved 'break.cwl' to 'file:///home/michael/cwltool/break.cwl'
[job break.cwl] /tmp/tmpW1GmoS$ echo \
/tmp/tmpyjzHPE/stgf8e0802a-9c8b-4c83-8708-a9deb3784d27/in…
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If I try http://view.commonwl.org:8082/workflows
with
* URL: `https://github.com/common-workflow-language/workflows.git`
* Branch: `master`
* Path: `/workflows/compile/compile1.cwl`
Then t…
stain updated
7 years ago
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Using cwl functionality
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Many of the workflows in this repo are parsed and viewed correctly when provided a sub-directory, ex. unaligned_bam_to_bqsr:
https://github.com/genome/cancer-genomics-workflow/tree/toil_compatibility…
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Now that I can see the parsing errors from some of my workflows, I realize that some of my workflows failed to visualize probably because they rely on files in submodules. See: https://github.com/ICGC…
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As I faced [this example](https://github.com/common-workflow-language/common-workflow-language/blob/master/v1.0/v1.0/count-lines2-wf.cwl#L16-L50), "steps" is described as dict of yaml (with key names …
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https://view.commonwl.org/workflows/github.com/roryk/salmon-cwl/tree/master///salmon-workflow.cwl
See `index` in the linked workflow
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This is a very neat tool. Couple questions:
1. Does this have to be strictly run as a web service? Could the container possibly be ran as a CLI?
2. Does it strictly need to input CWLs from githu…
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In this document: http://www.commonwl.org/v1.0/UserGuide.html
Code references to `InitialWorkDirRequirement` are preceded by descriptions of `CreateFileRequirement`. It's a bit confusing. Also, the ex…