-
```
___________________ test_disable_dir_overwrite_without_ext ____________________
@needs_docker
def test_disable_dir_overwrite_without_ext():
try:
tmp = …
-
## Intro
I am getting this error:
```
ERROR Workflow error, try again with --debug for more information:
createfile.cwl:18:5: Name '/scripts/myscript.sh' at index 0 of listing is invalid, paths…
-
Hi,
I have a clean install of bcbio and everything went fine with installation and no errors. While I tried to run sample it gave the following errors
```
[ec2-user@isamples]$ /newvolume/bcbio/…
-
We are currently finalizing support for GA4GH TES in Snakemake (see https://github.com/snakemake/snakemake/tree/integrate_tes_v2). A Snakemake WES is also in the works.
To allow integration with TRS …
-
#1451 Bug Report
### Expected behaviour
Dockstore 1.7.0 CLI should be able to pull workflows from both 1.6.0 and 1.7.0 servers. Note: should also test if 1.6.0 CLI can connect to 1.7.0 server (to do)…
-
In the Chapter 13 of Tutorial (https://github.com/common-workflow-language/user_guide/blame/gh-pages/_episodes/13-expressions.md#L85-L87) it is stated that "requirements must be provided as an array, …
-
Hi,
When merging and scattering arrays from the same step (like in the example workflow below) we got the error `The given job is already a predecessor of this job`
This error is specific to toil a…
-
Hello,
I'm getting errors with Toil installed through Bioconda in a fresh environment:
```
conda_path=/export/home/ncit/external/a.mizeranschi/toil_conda
cd ~
wget https://repo.continuum.io/minicon…
-
Symlink creation error when step fails
======================================
Problem description
-------------------
In certain situations, when a step fails with a non-zero exit status, Toil trie…
-
Maybe also include the generated files.