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Hi ,
I have been running mikado on the new tomato genome (size : 1.01 Gbp). It finished the mikado prepare step. However it has been running mikado serialize for quite a long time now. Also I have …
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**Submitting author:** @akrinos (Arianna Krinos)
**Repository:** https://github.com/AlexanderLabWHOI/EUKulele
**Version:** v1.0.2b
**Editor:** @will-rowe
**Reviewer:** @johanneswerner, @jcmcnch
**Arch…
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Hi @brianjohnhaas and @nathanweeks, the tip repository is looking great guys - moving to sqlite will and updating Transdecoder will greatly improve PASA. I just wanted to drop you a message saying I r…
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Hi Brian,
So I'm running the test data and wondering about a few gene models (seeing similar results in my local test data), where PASA gene models have 5' UTR features, however don't have valid st…
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Hi,
I have an instance of Apollo 2.2.0 running. I'm trying to load a GFF3 ouput from Braker2 v2.1.4 (augustus.hints.gff3)
This file is sorted.
here is a sample from this file :
```
chr1 AUGU…
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Hi,
I run Trinity version (v2.2.0) using the follwing command and it throws erro:
Trinity --seqType fq --max_memory 60G --left RNA_1.unmap1.fq.gz --right RNA_1.unmap2.fq.gz --CPU 10
shell Log…
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Hi, I'm running mikado2 with padding on maize genome. And I tried same command with dame files in two hpc clusters. I totally have 685 chromosomes and scaffolds, 648 already finished according to the …
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Hi @brianjohnhaas. Would you be willing to tag a new release so that the updated `psx` code can be incorporated? v2.3.3 is failing on HPC systems due to that copy fix.
Also, as I was trying to g…
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Hi
I have ran the folowing comman
tmhmm --short < Trinity.fasta.transdecoder.pep > tmhmm.out
and the output was
TMHMM_4267 dir empty
tmhmm.out file empty
it seems that the program is no…
ghost updated
4 years ago