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I am trying to run dammit on a clean Ubuntu install within VirtualBox on Mac OS 10.11. I am afraid that one of the tools didn't install properly -- I remember a lot of error codes being thrown. But un…
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talk 3
title: enabling bioinformatics applications on cloud computing
![ahmed_abdullah](https://cloud.githubusercontent.com/assets/11407438/10447777/a42c71b0-7187-11e5-8ed3-bc706fe11260.jpg)
Ahmed …
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Dear Pablo,
I am currently working on a bioinformatics project and using SnpEff tool for annotating my variant calls. Thanks for developing one of the most useful tool for scientific community.
I ha…
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```
This is what I try:
> interproscan.sh -i test.fa -f tsv --goterms --pathways
Welcome to InterProScan 5RC4
Running the following analyses:
[jobProDom-2006.1, jobPanther-7.2, jobGene3d-3.3.0, jobSMA…
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- [x] Research if DisProt is now bigger -- in 2009 was 460, in 2013 is 694
- [x] Research if in the meantime there is another dataset that is bigger / better --> see https://github.com/Rostlab/MetaDis…
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```
What steps will reproduce the problem?
1.>>> from pygr import worldbase
2.>>> worldbase.dir()
3.
What is the expected output? What do you see instead?
A list of databases expect but will get this…
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```
Currently uses the orange implementation for the calculations
1. convert to R
2. create way to select organism information similar to the 'Update Genomics
databases' tool in the bioinformatics wi…
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Our users (of transrate) have reported that Trinity has moved to using a hew FASTA header format that looks like:
`>TR18|c0_g1_i1 len=387 path=[365:0-386] [-1, 365, -2]`. (see issue https://github.com…
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https://www.patricbrc.org/portal/portal/patric/AntibioticResistance
Reachable from carousel Investigating Antibiotic Resistance link or from Data / Antibiotic Resistance dropdown
In the description a…
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_From @lomereiter on May 6, 2015 12:10_
E.g. page for the trait with id 10001 (where the unit is mg/dl) shows inadequate range statistics
![trait10001](https://cloud.githubusercontent.com/assets/662…