dib-lab dammit issues - Githubissues

dib-lab / dammit

just annotate it, dammit!

http://dib-lab.github.io/dammit/

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Two bug fixes so dammit can run

#245 taylorreiter closed 1 year ago
1
Add -L (follow redirects) to curl commands

#244 pansapiens opened 1 year ago
0
unable to install databases

#243 peter0k opened 1 year ago
3
dammit install through conda --- stuck at Solving environment

#242 Liyong-Zhang opened 1 year ago
0
problem in downloading database when running dammit databases --install

#241 tboonf opened 2 years ago
0
Cap doit to <0.36.0 to avoid TaskLoader2

#240 NickCrews opened 2 years ago
0
TaskLoader issue

#239 jarcasariego opened 2 years ago
4
doit.cmd_base.py:TaskLoader

#238 Snettisham opened 2 years ago
0
databases installation errors

#237 ncnlll opened 2 years ago
0
Not recognizing BUSCO?

#236 incoreygible opened 2 years ago
0
Failed install from conda-forge

#235 incoreygible closed 2 years ago
0
Can I download just the out-of-date tasks and move them into my database folder?

#234 shrhops closed 3 years ago
0
Download issue

#233 mthang opened 3 years ago
0
Optimized parameters for cmscan with Rfam

#232 camillescott opened 3 years ago
0
Failed to download a database

#231 josruirod closed 3 years ago
0
No symbol dbm_open found in library libdb-6.2.so

#230 pmoulos opened 3 years ago
1
curl: (28) Failed to connect to cegg.unige.ch port 21: Connection timed out

#229 hoelzer opened 3 years ago
14
Add benchmark directive to each rule

#228 bluegenes opened 3 years ago
0
TypeError: an integer is required (got type bytes)

#227 jtoy7 opened 3 years ago
2
`--no-rename` tests and duplicate name error checking

#226 camillescott closed 3 years ago
0
Solving environment: failed with repodata

#225 PedroDaPos opened 3 years ago
1
Update to BUSCO v5

#223 camillescott closed 3 years ago
0
Add a verbosity flag

#222 camillescott closed 3 years ago
0
Expose `--rename-regex` in main annotate CLI

#221 camillescott closed 3 years ago
0
Enable user to select whether to rename transcripts

#220 camillescott closed 3 years ago
0
Add support for Snakemake extra args to annotate and databases

#219 camillescott closed 3 years ago
0
TODO: Move target generation inside Snakefile

#218 camillescott opened 3 years ago
0
TODO: Backmap renamed transcripts in final FASTA

#217 camillescott closed 3 years ago
1
TODO: support extra snakemake args

#216 camillescott closed 3 years ago
0
Attempt making paths portable

#215 camillescott closed 3 years ago
0
EXP: MacOS compatibility

#214 camillescott opened 3 years ago
0
Implement basic GFF3 conversion for BUSCO results

#213 camillescott closed 3 years ago
0
Additional Cleanup

#212 camillescott closed 3 years ago
0
Implement caching for Snakemake-managed conda environments

#211 camillescott closed 3 years ago
0
Fix tests for test_components::TranscriptomeStats, test data for --quick

#210 camillescott closed 3 years ago
0
TODO: migrate python logging to XDG spec

#209 camillescott closed 3 years ago
1
Migrate to github-actions

#208 camillescott closed 3 years ago
0
Environment suggestions

#207 luizirber closed 3 years ago
2
Staging for version 2.0

#206 camillescott opened 3 years ago
0
Add an environment variable DAMMIT_TESTING_TEMP_BASE_DIR to set a sta…

#205 camillescott closed 3 years ago
0
Improvements to UI

#204 camillescott closed 3 years ago
0
TypeError: lastal_task() got an unexpected keyword argument 'pbs'

#203 AntonioBaeza opened 3 years ago
6
Can I install newer versions of BUSCO than v2?

#202 sformel opened 4 years ago
0
Snakefile formatting and file hierarchy cleanup

#201 camillescott closed 3 years ago
0
Refactor GFF3 conversion code to fix ID non-determinism with threading

#200 camillescott closed 4 years ago
0
add'l integration tests

#199 bluegenes opened 4 years ago
0
Opeify

#198 camillescott closed 4 years ago
0
[WIP] docs2.0

#197 bluegenes opened 4 years ago
0
Nuke it from orbit: general clean-up and bugfixing

#196 camillescott closed 4 years ago
0
Please delete this issue

#195 vragh opened 4 years ago
0