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dib-lab
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dammit
just annotate it, dammit!
http://dib-lab.github.io/dammit/
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TaskError - taskid:hmmscan:longest_orfs.pep.x.Pfam-A.hmm
#194
sarah872
opened
4 years ago
0
use mamba for conda installations
#193
bluegenes
closed
4 years ago
0
Get metalink working for database download
#192
bluegenes
opened
4 years ago
0
Expose `--split-regex` from dammit rename-fasta to main dammit annotate pipeline
#191
camillescott
closed
3 years ago
0
seqid inconsistency with --no-rename between shmlast and other programs
#190
camillescott
opened
4 years ago
0
add wrapper tests
#189
bluegenes
closed
4 years ago
0
Update Tests
#188
camillescott
closed
4 years ago
0
`damit annotate` Exited with exit code 140
#187
CeciliaDeng
opened
4 years ago
2
Plot busco
#186
bluegenes
closed
4 years ago
0
Migrate config and temp file locations, conform output filenames to v1.2 format
#185
camillescott
closed
4 years ago
0
produce final annotation files!
#184
bluegenes
closed
4 years ago
0
Error: sqlite3 unable to open database file
#183
blasks
opened
4 years ago
4
try using a snakemake profile to set cluster run params
#182
bluegenes
opened
4 years ago
0
Init snakemake report
#180
bluegenes
opened
4 years ago
0
[MRG] change busco wrapper to enable config
#179
bluegenes
closed
4 years ago
0
Enable user databases, busco databases
#178
bluegenes
closed
4 years ago
1
Unify click and argparse interfaces
#177
camillescott
closed
4 years ago
2
get mkdocs theme via gh-actions
#176
bluegenes
closed
4 years ago
2
Add conversion rules
#175
bluegenes
closed
4 years ago
1
Convert to Click
#174
camillescott
closed
3 years ago
1
docs docs docs
#173
bluegenes
closed
3 years ago
1
Use mkdocs submodule
#172
camillescott
closed
4 years ago
1
Update requirements
#171
camillescott
closed
4 years ago
0
Add rename rule to snakemake workflow.
#170
bluegenes
closed
4 years ago
0
Add task to convert transcript names *back* to original names (post annotation)
#169
bluegenes
closed
3 years ago
2
Write busco v4 rule
#168
bluegenes
closed
4 years ago
1
Update `requirements.txt` and conda environments.
#167
camillescott
closed
4 years ago
0
Add conversion rules to snakemake.
#166
camillescott
closed
4 years ago
0
Add wrappers for components.
#165
camillescott
closed
4 years ago
0
Running PR for Snakemakeification
#164
camillescott
opened
4 years ago
0
Accidentally ran without pep file at first. Which files to delete? And nohup issue
#163
christa88
opened
4 years ago
0
Fixes for #161
#162
eburgueno
closed
3 years ago
1
BUSCO v2 database download fails, but gets marked as done
#161
eburgueno
opened
4 years ago
0
script killed at fasta-annotate step
#160
DrPintoThe2nd
closed
2 months ago
0
error
#159
christa88
closed
4 years ago
0
Bump eslint from 4.18.1 to 4.18.2 in /mkdocs-material-dib
#158
dependabot[bot]
closed
4 years ago
0
Fix transdecoder sep
#157
camillescott
closed
4 years ago
0
new install fails
#156
macmanes
closed
4 years ago
2
new install fails
#155
macmanes
closed
4 years ago
0
lastdb:uniref90
#154
AEG4
opened
4 years ago
1
TaskFailed - taskid:hmmscan:longest_orfs.pep.x.Pfam-A.hmm
#153
truelalin
closed
4 years ago
3
Update bioconda package
#152
ppericard
closed
4 years ago
1
Fix typo in Inferal vs. Infernal
#151
taylorreiter
closed
3 years ago
0
OSError: [Errno30]
#150
davidjquispe
opened
5 years ago
1
parse out gff3 - no modules named pandas
#149
seboles
closed
4 years ago
3
KeyError: 'query_name'
#148
MDSharma
closed
4 years ago
2
BUSCO V1 database curl urls changed
#147
schomakerra
opened
5 years ago
1
OrthoDBv10
#146
rix133
opened
5 years ago
0
output explanation
#145
Maya0801
opened
5 years ago
0
TaskError - taskid:download:Pfam-A.hmm.gz
#144
Maya0801
opened
5 years ago
0
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