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dib-lab
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dammit
just annotate it, dammit!
http://dib-lab.github.io/dammit/
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Two bug fixes so dammit can run
#245
taylorreiter
closed
1 year ago
1
Add -L (follow redirects) to curl commands
#244
pansapiens
opened
1 year ago
0
unable to install databases
#243
peter0k
opened
1 year ago
3
dammit install through conda --- stuck at Solving environment
#242
Liyong-Zhang
opened
1 year ago
0
problem in downloading database when running dammit databases --install
#241
tboonf
opened
1 year ago
0
Cap doit to <0.36.0 to avoid TaskLoader2
#240
NickCrews
opened
1 year ago
0
TaskLoader issue
#239
jarcasariego
opened
1 year ago
4
doit.cmd_base.py:TaskLoader
#238
Snettisham
opened
2 years ago
0
databases installation errors
#237
ncnlll
opened
2 years ago
0
Not recognizing BUSCO?
#236
incoreygible
opened
2 years ago
0
Failed install from conda-forge
#235
incoreygible
closed
2 years ago
0
Can I download just the out-of-date tasks and move them into my database folder?
#234
shrhops
closed
2 years ago
0
Download issue
#233
mthang
opened
2 years ago
0
Optimized parameters for cmscan with Rfam
#232
camillescott
opened
3 years ago
0
Failed to download a database
#231
josruirod
closed
3 years ago
0
No symbol dbm_open found in library libdb-6.2.so
#230
pmoulos
opened
3 years ago
1
curl: (28) Failed to connect to cegg.unige.ch port 21: Connection timed out
#229
hoelzer
opened
3 years ago
14
Add benchmark directive to each rule
#228
bluegenes
opened
3 years ago
0
TypeError: an integer is required (got type bytes)
#227
jtoy7
opened
3 years ago
2
`--no-rename` tests and duplicate name error checking
#226
camillescott
closed
3 years ago
0
Solving environment: failed with repodata
#225
PedroDaPos
opened
3 years ago
1
Update to BUSCO v5
#223
camillescott
closed
3 years ago
0
Add a verbosity flag
#222
camillescott
closed
3 years ago
0
Expose `--rename-regex` in main annotate CLI
#221
camillescott
closed
3 years ago
0
Enable user to select whether to rename transcripts
#220
camillescott
closed
3 years ago
0
Add support for Snakemake extra args to annotate and databases
#219
camillescott
closed
3 years ago
0
TODO: Move target generation inside Snakefile
#218
camillescott
opened
3 years ago
0
TODO: Backmap renamed transcripts in final FASTA
#217
camillescott
closed
3 years ago
1
TODO: support extra snakemake args
#216
camillescott
closed
3 years ago
0
Attempt making paths portable
#215
camillescott
closed
3 years ago
0
EXP: MacOS compatibility
#214
camillescott
opened
3 years ago
0
Implement basic GFF3 conversion for BUSCO results
#213
camillescott
closed
3 years ago
0
Additional Cleanup
#212
camillescott
closed
3 years ago
0
Implement caching for Snakemake-managed conda environments
#211
camillescott
closed
3 years ago
0
Fix tests for test_components::TranscriptomeStats, test data for --quick
#210
camillescott
closed
3 years ago
0
TODO: migrate python logging to XDG spec
#209
camillescott
closed
3 years ago
1
Migrate to github-actions
#208
camillescott
closed
3 years ago
0
Environment suggestions
#207
luizirber
closed
3 years ago
2
Staging for version 2.0
#206
camillescott
opened
3 years ago
0
Add an environment variable DAMMIT_TESTING_TEMP_BASE_DIR to set a sta…
#205
camillescott
closed
3 years ago
0
Improvements to UI
#204
camillescott
closed
3 years ago
0
TypeError: lastal_task() got an unexpected keyword argument 'pbs'
#203
AntonioBaeza
opened
3 years ago
6
Can I install newer versions of BUSCO than v2?
#202
sformel
opened
3 years ago
0
Snakefile formatting and file hierarchy cleanup
#201
camillescott
closed
3 years ago
0
Refactor GFF3 conversion code to fix ID non-determinism with threading
#200
camillescott
closed
3 years ago
0
add'l integration tests
#199
bluegenes
opened
3 years ago
0
Opeify
#198
camillescott
closed
3 years ago
0
[WIP] docs2.0
#197
bluegenes
opened
3 years ago
0
Nuke it from orbit: general clean-up and bugfixing
#196
camillescott
closed
3 years ago
0
Please delete this issue
#195
vragh
opened
4 years ago
0
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