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dib-lab
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dammit
just annotate it, dammit!
http://dib-lab.github.io/dammit/
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finish converting about to md
#143
bluegenes
closed
5 years ago
0
Ortho DB v9
#142
rix133
opened
5 years ago
0
can't install multiple busco databases at once
#141
bluegenes
opened
5 years ago
0
database install fails with n_threads
#140
bluegenes
opened
5 years ago
1
pandas sorting, GFF3Parser problem
#139
johnsolk
opened
5 years ago
5
citation?
#138
johnsolk
closed
4 years ago
2
Dammit fails at the cmscan-gff3 step
#137
VladimirMashanov
opened
5 years ago
0
dammit install on bioconda
#136
desmondramirez
closed
4 years ago
11
Warning: unable to close filehandle properly: No space left on device during global destruction.
#135
johnsolk
opened
5 years ago
3
TaskError - IndexError: list index out of range
#134
johnsolk
opened
5 years ago
1
TaskError - taskid:remap_hmmer:longest_orfs.pep.x.pfam.tbl: UnboundLocalError: local variable 'q' referenced before assignment
#133
johnsolk
opened
5 years ago
2
Clean up mkdocs
#132
charlesreid1
closed
5 years ago
2
parsing output to make transcript-gene.csv table for tximport
#131
johnsolk
opened
5 years ago
0
Fix ill-formed version specifications
#130
camillescott
closed
5 years ago
0
added dev_notes.md draft
#129
johnsolk
closed
5 years ago
0
Migrate to MkDocs from sphinx
#128
bluegenes
closed
5 years ago
0
WIP Transition to mkdocs
#127
camillescott
closed
5 years ago
0
using multiple aa databases, ERROR: Two different tasks can't have a common target
#126
johnsolk
closed
5 years ago
2
pandoc md from rst; rm rst
#125
johnsolk
closed
5 years ago
0
Stop using conda build for travis build
#124
camillescott
closed
5 years ago
0
Databases Error: BUSCO not found
#123
duanweixiang
closed
5 years ago
0
fix link to travis
#122
camillescott
closed
5 years ago
0
Fix Travis
#121
camillescott
closed
5 years ago
0
hack renaming function to keep original header
#120
bluegenes
closed
5 years ago
1
add version for LAST
#119
bluegenes
closed
5 years ago
0
ModuleNotFoundError: No module named 'pipebricks'
#118
johnsolk
closed
5 years ago
1
Add swissprot database to default pipeline
#117
bluegenes
closed
5 years ago
1
Using dammit for genome?
#116
apredeus
opened
6 years ago
0
patch NR pipeline
#115
bluegenes
closed
5 years ago
0
BUSCO dependency error
#114
camillescott
opened
6 years ago
1
dammit databases --install fails on BUSCO db download - url broken
#113
johnsolk
closed
5 years ago
0
test
#112
camillescott
closed
6 years ago
1
run_BUSCO.py running problem
#111
BiodeB
closed
6 years ago
7
transdecoder failing with conda recipe installation
#110
bluegenes
closed
6 years ago
0
fix conda recipe and busco download issues
#109
bluegenes
closed
6 years ago
1
annotate with NR
#108
bluegenes
closed
6 years ago
1
gene ontology
#107
mictadlo
opened
6 years ago
0
diamond as a replacement for BLAST
#106
mictadlo
opened
6 years ago
1
error using dammit GFF3Parser in binder
#105
johnsolk
closed
6 years ago
5
error at lastal step
#104
DrPintoThe2nd
closed
4 years ago
5
Ubuntu 16.04 BUSCO error
#103
DrPintoThe2nd
closed
6 years ago
2
order features in dammit output gff3 is not right
#102
arsilan324
opened
6 years ago
0
multithread transcoder.predict
#101
macmanes
closed
6 years ago
0
Changed location for busco DB
#100
apredeus
opened
7 years ago
0
new plant set
#99
mictadlo
opened
7 years ago
1
snakemake for dammit
#98
mictadlo
closed
6 years ago
1
dammit was added to bioconda
#97
mictadlo
opened
7 years ago
1
AttributeError: 'NoneType' object has no attribute 'groupdict'
#96
macmanes
closed
6 years ago
5
Summary stats for annotations
#95
clogan88
opened
7 years ago
0
ParserWarning?
#94
johnsolk
opened
7 years ago
0
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