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# Context
See [**schema_reference**](https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/5.1.0/schema.md#schema_reference) and [**schema_version**](https://github.com/chanzuck…
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# Design
**In Progress**
See [Review impact of HsapDv and MMusDV updates to development stage filter](https://app.zenhub.com/workspaces/single-cell-5e2a191dad828d52cc78b028/issues/gh/chanzucke…
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# Motivation
The schema.md should be the source of truth for what is in the schema. Now that cellxgene-ontology-guide is used to track the ontology version used, it should be mentioned where it can b…
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Context:
Slack: https://czi-sci.slack.com/archives/C0247APK621/p1711647089759669
Couple things to iron out towards Visium support. They may be caused by an embedding having null values for some of th…
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### Project short name:
HumantCREsAtlas
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/1OAMwBTrVRnEsF37GI4…
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Thanks for making it possible to read `h5ad` files into R.
I had a few issues/questions after trying to get the raw count matrix from a public `h5ad` file.
Some of these points were touched on in …
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I'm trying to reach the tools cellxgene & azimuth and they can't be reached.
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Hi,
I downloaded the extended data atlas from CellxGene, and was surprised to find many cells labeled as "malignant" in supposedly normal tissues (see screenshot containing malignant cell counts pe…
rpeys updated
6 months ago
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The cell type “Native cell” (CL:0000003) will be deprecated in the coming 4.1 schema, and **it will be replaced by “unknown” for both** `cell_type` and `cell_type_ontology_term_id`
It is theorized th…