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**Describe the bug**
Our geneticists asked whether the compound top 20 on the SNV/indel page works as intended.
Here is one example:
![compound_page](https://github.com/user-attachments/asset…
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**Describe the bug**
Previously (before updating 4.81 -> 4.88), when navigating to an MT variant page, it was possible to bring up the IGV viewer track including coverage tracks.
Now coverage tr…
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Coordinates based on transcripts depend on the exon structure at least. Coding position requires also cds start and end.
Proposal: Implement TranscriptLocation, à la HGVS, by creating a class that …
reece updated
2 years ago
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Is it possible to read in a homology modeled structure that is not in RCSB pdb using the
`-pdb-file-dir`
argument?
Thanks
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The MAF format in the (current documentation)(https://cbioportal.readthedocs.io/en/latest/File-Formats.html) is too complex and not accurate. For example, I think we should always require the genomic …
jjgao updated
3 years ago
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Greetings,
I'm running into an error when chunking the reference. Here is my command
```
singularity exec /data/containers/glimpse_v2.0.0-27-g0919952_20221207.sif GLIMPSE2_split_reference \
--re…
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It would be amazing if all of the file types specified here such as VCF v4.2 had a formally defined and [registered MIME type with the IANA](https://www.iana.org/form/media-types) for use in interchan…
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This is a high-level proposal for using BigQuery as a query backend instead of Elasticsearch. @hanars, I'd love to hear whether this is something that you'd find worth considering for Broad's seqr dep…
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Analisando com a equipe de marcação e com a equipe de desenvolvimento concluirmos que a tag ``, pode conter conteúdos variados, ex.:
- `1`
- `1 (suppl)`
- `1 (suppl.)`
- `1 suppl`
Reparem que esse…
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The origin of the plant is the subject of debate.[26][27][28] O.F. Cook was one of the earliest modern researchers to draw conclusions about the location of origin of Cocos nucifera based on its curre…