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- [x] Algorithms have unique KiSAO ids
- [x] Parameters of an algorithm have unique KiSAO ids
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For algorithms that iterate to a solution (steady state finders in particular), a limit on the number of iterations that should be performed is often helpful.
Reported by: luciansmith
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The `symbol` attribute of `SetValue` intended to enable repeated tasks to set the value of the internal state of simulation tools.
There are multiple issues with this
- There are no examples for t…
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tellurium recognizes KiSAO terms with the id pattern `KISAO:\d{7}`. However, the correct pattern is `KISAO_\d{7}`.
This should be corrected. To retain compatibility with erroneous SED-ML files, the…
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KISAO_0000243 --> KISAO_0000553
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The validator returns this
```json
{
"error": [
{
"status": "400",
"title": "ValidatorError",
"detail": "Algorithms must be annotated with unique KiSAO terms",
"s…
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- CVODES, IDAS
- KISAO_0000243: Flag to activate stability limit detection
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From KiSAO surveymonkey:
Q3: Algorithm name (e.g. tau-leaping method):
Maximal Timestep Method
Q4: Short description:
Hybrid simulation algorithm integrating Gillespie exact simulation and…
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Can you please clarify the intended semantics of addXML, changeXML, and removeXML? The semantics are not clear to me when the `target` XPATH matches multiple XML elements or NewXML has multiple childr…
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## Solvers to initially support
KISAO terms exist for each of these algorithms and each of their parameters
- `gillespy2.solvers.numpy.ode_solver.ODESolver` (`integrator`=`lsoda`): KISAO:0000088
…