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Dear developer of Monocle,
We tried to use Monocle for Raw file conversion before searching and quantifying our files via Fragpipe. Everything goes fine until the step of quantification when Ionqua…
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Dear Alexey, Fengchao and the rest of the FragPipe team
I have to say that you have done a really great job on the new Fragpipe version 17.0 which really improves IDs in our datasets even further. O…
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- Describe the issue or question:
java.lang.OutOfMemoryError: Java heap space
java.lang.OutOfMemoryError: Java heap space
Failed in checking D:\FragpipeTest_HCT116\23092021_Fusion_Gautam_NT1.raw. W…
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- Describe the issue or question:
https://github.com/Nesvilab/philosopher/discussions/276#discussioncomment-1302874
I would be really helpful if one could develop a FragPipe workflow using the G…
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- Describe the issue or question:
Hi, I am converting the Thermo raw files to mzml format using the instructions provided on Fragpipe website using MSConvert. when I upload the mzml files generated, …
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For new term requests, please provide the following information:
## Preferred term label
Label-free quantification
## Synonyms
LFQ
## Textual definition
This uses mass spectrometry t…
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Dear, Monash
I tried to use docker version of LFQ analyst but failed.
The erro…
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We need to add the proteomics LFQ modules to the pipeline.
## Is your feature request related to a problem? Please describe
## Describe the solution you'd like
## Describe al…
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Hello Nesvilab!
We are very happy with your Fragpipe/MSFragger software! Great work, and thank you for your efforts. One thing we haven't been able to figure out is why we are not getting any value…
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Is this software compatible with Fragpipe TMT experiments?