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The new segmented copy number datasets (DNAcopy) have copy number data for samples that are blood normal. We only want copy number data for the tumor samples.
![Screen Shot 2019-07-01 at 4 16 42 P…
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These are samples that have slide image data and phenotype data but no genomic data. These samples tend to end in 'Z', rather than 'A' or 'B'
![Screen Shot 2019-07-01 at 4 25 04 PM](https://user-im…
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```
from . import xenaQuery as xena
def Gene_values (hub, dataset, samples, gene):
values = xena.dataset_gene_values (hub, dataset, samples, [gene])
return values[0]["scores"][0]
def …
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@yunhailuo On reading the project description [here](https://github.com/ucscXena/ucsc-xena-client/wiki/update-GDC-data-on-Xena); I noticed the part of the document which talked about wrangling the TCG…
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```bash
$ go get -u -v github.com/Xe/x/cmd/dnsd@latest
go: cannot use path@version syntax in GOPATH mode
```
```
$ go get -u -v github.com/Xe/x/cmd/dnsdgithub.com/Xe/x (download)
github.com/mi…
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Submitting Author: Shixiang Wang (@ShixiangWang)
Repository: https://github.com/ShixiangWang/UCSCXenaTools
---
- Paste the full DESCRIPTION file inside a code block below:
```
Package…
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Is it possible to return the entire entity in a projection or to only selectively get specific properties? If the latter, I guess this becomes a feature request since it's tedious to get every single …
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- [ ] move panel to a single diff layer at the XGSA level
- [ ] highlight diff as I draw across it
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In `gdc.py`, `search()` will perform a GET request even if the request method is other than GET. Or, it will perform a GET request even if (say) `method='PUT'` is passed as an argument.
Location of…