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UCSCXenaTools
:package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
https://docs.ropensci.org/UCSCXenaTools
GNU General Public License v3.0
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how to get log(TPM+1) values
#44
sunta3iouxos
opened
3 weeks ago
9
Recent data updates from UCSCXena
#43
ShixiangWang
closed
3 weeks ago
2
Enhancements
#42
ShixiangWang
opened
3 months ago
1
Error in fetch_dense_values
#41
jbagnot
closed
4 months ago
3
UCSCXenaTools: Retrieve Gene Expression and Clinical Information from UCSC Xena for Survival Analysis
#40
gbregni
closed
3 months ago
2
一个450K芯片的cg位点在多个TCGA肿瘤的pattern
#39
iamhealthy
closed
10 months ago
5
options(use_hiplot = TRUE) doesn't work
#38
ayueme
closed
1 year ago
3
XenaQuery throws error
#37
Amhaslam
closed
2 years ago
4
CRAN checks
#36
ShixiangWang
closed
3 years ago
0
issue: couldn't download pancanAtlas data
#35
ghost
closed
3 years ago
7
xena的下载链接全局有了更新
#34
ShixiangWang
closed
3 years ago
1
use a GitHub release after each CRAN update?
#33
maelle
closed
3 years ago
2
add treehouse
#32
ShixiangWang
closed
3 years ago
0
这种方式对下载有帮助吗？
#31
ShixiangWang
closed
2 years ago
2
Hiplot server deploy and mirror setting
#30
ShixiangWang
closed
3 years ago
1
获取 sparse 数据的接口
#29
ShixiangWang
closed
4 years ago
0
Treehouse 由于证书问题无法访问
#28
ShixiangWang
closed
4 years ago
2
treehouse 还没有上线
#27
ShixiangWang
closed
4 years ago
0
treehouse update fails
#26
markgene
closed
4 years ago
4
Error downloading CCLE datasets from publicHub
#25
vuzun
closed
4 years ago
3
更新最近的PCAWG数据源
#24
ShixiangWang
closed
4 years ago
0
Explanation of terms
#23
adomingues
closed
4 years ago
3
missing "OS", "OS.time", "OS.unit", "RFS", "RFS.time", "RFS.unit" columns in the downloaded clinical infomration file from TCGA
#22
danshu
closed
4 years ago
3
更新下 pkgdown 列表的呈现方式
#21
ShixiangWang
closed
4 years ago
0
more detail in NEWS.md?
#20
sckott
closed
4 years ago
3
Win action 没通过，pretty doc 没装好
#19
ShixiangWang
closed
4 years ago
1
引入 R actions
#18
ShixiangWang
closed
5 years ago
0
判断下是不是没有基因留下了
#17
ShixiangWang
closed
5 years ago
0
检查下 CRAN not ok
#16
ShixiangWang
closed
5 years ago
0
移除warning
#15
ShixiangWang
closed
5 years ago
0
Wrong URL
#14
ShixiangWang
closed
5 years ago
0
支持断点续传
#13
ShixiangWang
closed
5 years ago
6
can not access the GDC dataset
#12
JianGuoZhou3
closed
5 years ago
9
Function naming strategy
#11
ShixiangWang
closed
5 years ago
1
New feature: XenaScan()
#10
ShixiangWang
closed
5 years ago
0
New feature: XenaExperiment?
#9
ShixiangWang
closed
5 years ago
0
bad option check in fetch_dense_values
#8
ShixiangWang
closed
5 years ago
0
Cannot query copy number data
#7
ShixiangWang
closed
5 years ago
1
xenaPython对外开放的API函数
#6
ShixiangWang
closed
5 years ago
6
API function for querying single gene or sample does not work
#5
ShixiangWang
closed
5 years ago
3
RemoveGermlineCNV 没有移除种系CNV?
#4
ShixiangWang
closed
5 years ago
1
PrimaryDisease not show in XenaData
#3
ShixiangWang
closed
5 years ago
0
DownloadTCGA下载报错
#2
ShixiangWang
closed
5 years ago
1
增加ProbeMap下载
#1
ShixiangWang
closed
5 years ago
1