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Hi @PengNi ,
Sorry for this silly question, but I was wondering how you made that circle plot in your paper.
As you mentioned in the paper you binned genome in 1mb regions, did you also binned methy…
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Following up on this as I think this is now a feature that would be widely used with both PacBio and Nanopore reads. Currently we use a lazy hack with the IGV bisulfite mode to color code methylated/u…
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Splitting report is generated by `bismark_methylation_extractor` in the format (for PE):
> $base."_splitting_report.txt"
But `bismark2summary` function looks for the file:
> $base."_pe.dedupl…
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Hi,
Can not install oracle-java8-installer in my Ubuntu system, the error is E: Package 'oracle-java8-installer' has no installation candidate.
And more detail about Elasticsearch install should…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/boyinggong/MethCP
Confirm the following by editin…
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Hello:
Does the scripts has corresponding published paper or theoretical support that you can share?
Thanks
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right now you get this which is bogus on many levels (duplicated and confusing categories, confusing tool names etc). We need to put more order into this. @vdauwera can you help come up with a better …
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Hello!
I have some problem when i calculate the bs rate.I combined the genome.fa and oligo.fa.Then make index and bismark mapped.I try to extract the reads mapped to the oligo.fa,but there were no re…
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Maybe you already did this too 😄
but what is your recommendation for trimming?
Maybe 10bp 5'
Phred
remove adaptors
??
sr320 updated
4 years ago
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Should we apply?
https://escience.washington.edu/get-involved/incubator-programs/overview/
sr320 updated
4 years ago