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Hello,
I am trying to run an LFQ search using IonQuant in combination with an MSFragger OpenSearch without Crystal-C but I am receiving the error in the title just after "2020-11-19 19:08:04 [INFO]…
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- Describe the issue or question:
Hi,
I am using the FragPipe LFQ-MBR workflow to do LFQ as tutorial (https://fragpipe.nesvilab.org/docs/tutorial_lfq.html).
The problem is that FragPipe ident…
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Suggestion by @JuliaS92 for the LFQ optimisation:
> It would be great if one could longterm include an option to provide lists of proteins to use as absis for this normalization, e.g. with unspecif…
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Hi Mathias,
When loading the MaxQuant data from my own dataset I get an error:
==============
> MaxQ
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We need to re-implement our pipe system in Rust.
@moyix suggested moving from an LFQ model to using a lock free ring buffer. This implementation looks useful: https://github.com/utaal/spsc-bip-buff…
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Dear FragPipe developers,
I am reanalyzing a published data set (http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD016455).
When I try to run a LFQ-MBR workflow with (almost) defau…
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Dear Developers,
We have a Bruker TIMS-TOF MS system. We tried to analyze our data (these data was obtained from QTOF experiments without ion mobility) with Fragpipe including MSfragger 3.3 and phil…
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### Steps to reproduce the behavior (Required)
1. DROP DATABASE IF EXISTS g0;
CREATE DATABASE g0;
USE g0;
admin set frontend config ("enable_decimal_v3" = "true");
CREATE TABLE IF NOT EXISTS …
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**Describe the bug**
Hello,
I'm trying to generate a spectral library from Thermo DDA runs. I'm running FragPipe in headless mode in Linux with a workflow copied from the GUI to include spectral l…
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Hello Fragpipe developers,
I'm really interested in doing PTM type of studies using Fragpipe, so far I have gained some experience doing LFQ analysis and I'm happy with results I'm getting. For PTM…
algom updated
3 years ago