-
### Windows Terminal version
1.18.1241.0
### Windows build number
10.0.22621.1702
### Other Software
Vim 9.0.1472
### Steps to reproduce
I have the following colorscheme in MS Ter…
-
Dear @cwnelson88 ,
Thanks for implementing these solutions in these scripts! These are hugely time-saving for anyone interested in accomplishing gene-centered population genomics!
I have some qu…
-
Hi,
I build an assembly using long-reads and now I want to polish it using POLCA.
At first, I didn't specify the $PATH to bwa, but fixed it, then had a memory issue, and then it almost worked.
Th…
-
Hi Chase -
I have performed the within-pool using the vcf report as input. Now I have several output and I am trying to understand (after reading your papers and references reported in the README.md)…
-
This is to start some high-level discussion regarding the possibility of supporting 32-bit glyph IDs, but in (high-level) terms of what it would entail and potential reasons / benefits for it.
## B…
-
I recently noticed that PDBFixer does not write out SEQRES entries in the output of a PDB file when the input PDB file does have SEQRES entries. Should this be expected behavior, and is there a way we…
-
Hi,
Thanks for this very useful package! I'm interesting in running the tool on some smart-seq2 datasets.
How should I set up the files so that I can keep using the same snakefile?
Thanks in ad…
jmfa updated
11 months ago
-
Some of our error messages (across the variantValidator tool set not just the core) are not as informative as they could be. For example user errors in using typo'd genomic sequence IDs for validation…
-
Hi
I have a question in regards to how VG handles repeat regions.
My genome is around 80% repeats, based on some papers I've read and my results with Repeat Masker.
I'm working with a 20 geno…
-
Query: C14235T, C16877T, C21654T
KP.3.3.3> C28657T> C16877T(Orf1b:T1137I)> G6545A(Orf1a:D2094N), C14235T, C21654T(S:S31F)
06-17~07-26 Miyagi, Japan
https://nextstrain.org/fetch/genome-test.gi.u…