-
The project can be released to pypi so that it can be easily downloaded by pip or other installers.
-
To calculate survival, you need two columns. Right now there are two pairs of columns in the survival data files:
1. _EVENT and _TIME_TO_EVENT
2. _OS and _OS_IND
_EVENT and _TIME_TO_EVENT should …
-
Submitting Author: ShixiangWang (@ShixiangWang)
Repository: https://github.com/ShixiangWang/UCSCXenaTools
Version submitted: 1.2.3
Editor: @melvidoni
Reviewer 1: @ChristineStawitz-NOAA
Re…
-
FULL TEXT: Work with the Broad and Hopkins group to establish standard mechanisms for integrating applications into FireCloud, enabling Galaxy, Xena, etc. to use common mechanisms for data access, etc…
-
```
from . import xenaQuery as xena
def Gene_values (hub, dataset, samples, gene):
values = xena.dataset_gene_values (hub, dataset, samples, [gene])
return values[0]["scores"][0]
def …
-
The new segmented copy number datasets (DNAcopy) have copy number data for samples that are blood normal. We only want copy number data for the tumor samples.
; I noticed the part of the document which talked about wrangling the TCG…
-
These are samples that have slide image data and phenotype data but no genomic data. These samples tend to end in 'Z', rather than 'A' or 'B'
Repository: https://github.com/ShixiangWang/UCSCXenaTools
---
- Paste the full DESCRIPTION file inside a code block below:
```
Package…
-