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I can run ggpicrust2 with the provided example data (but not plot it, made a separate entry for that #101) but I am struggling to get it work with my own data.
Here is my code
```r
library(read…
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Currently we have count abundance. Abundance categories requested.
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Hi Bo,
I was using the standalone tool to identify/validate a novel peptide. How do I know the abundance of that peptide in different samples?
best,
Emily
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¹²⁶Te abundance is 8.84 - it should be 18.84
to check: abundancies of Te isotopes currently add up to 90% instead of 100%
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**Describe the Bug**
Wnen I use ggpicrust2 function, it always generates the error. Any help would be greatly appreciated.
Here's my dataset including the "pred_metagenome_unstart.tsv" file and "m…
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Hi, thanks for your very useful tool, and the one I am using it version 1.9.0. I have extracted viral contigs from metagenomic sequencing data of stool, and now want to estimate the relative abundance…
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The data cube output from the abundance/trend model (see the `HSSurv` repo) is the starting point for many of the tables/figures used the manuscript.
The file `docs/working_with_datacube.R` has som…
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Hi,
In this result, should I select Predicted_Depth?
Strain_ID Strain_Name Cluster_ID Relative_Abundance_Inside_Cluster Predicted_Depth Coverage Covered/Total_kmr
Why is there no Predicted_Depth…
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A KDE (or anything) constructed based on observations of a few individuals will be much pointier than one constructed based on more observations. This can lead to counterintuitive overlap outcomes: ev…
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This section prints off a table that has the abundance counts of the Ecoli identified strains in a particular sample. I included this to show the user how to pull out exact counts as I thought that ma…